Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01117 ATGATCCGCGGTTACAGATGTGGATTTTTGTACGACCTTTTAATTGGGATCTATGGTTGTCCATTGCCTCCGTCAGTGTGTTTAATTGTAGGAGGTATCATACTATTCATGGAACGGAAAGTTAAGCATGATTCATCAGGACCTGAAAATTCGTCATGTAAGAAGAAACTTAGTGGGTATCACACTATTCTATGGTTTCCCCTAGTGCAAGCAGTTCTTCCTGATAGGGAATCATTGGTCAAGAATTGCTCCAGGTTTGTGCTTGTGTTGTGGTTGATTCTTGTATTTGTACTAATGCAAAGTTACACAGCATGCTTGTCATCAATCTTGACCGTACATCATCTGCAACCTTATTACCCTAGTGAGTTTGATGTTATAAATGATCCCAACGTTAAGATTGGATACCAAGGTGGCTCATTCATCAAAGGCTTGTTGCTGGAGAGTTTAAACGTTGACAAGTCAAGGGTGAAGAACTATTCCACCATTGAACAATATAAGGATGCCTTAGATAAAGGAAGCCATAAAGGTGGTGTTGATGCTATTTTTGATGAAGTTCCCTACATTAAGATCTTCCTCAAAAAATATGATTCCAAGTATGCTATGATTGGCACGAGGCACCGTACTGATGGATTTGGTTTTGCATTCCCCAAAGGGTCCACCTTAACTTCACACTTTTCCAGAGCGGTATTGTATGTGCGTGAGAATATAGAAATGGATGAGATTGAGGAGAAATATTTTGGAAGCAGTAACAACGATGATGAAGGCCAAGACATATCTAATTCATCTTTAGATGATTCAAGTTCCAGCAGGCTTAGTACTTATAGCTTTGCAGGTTTGTTTATATTAATCGGAGTTCTTTCACTGTTAGCTTTAGCAGTCTCTGAAAGTTATATTTGGCGAAAACCTGTGATGCTAGCAAAAACTTACAGCCGACAAGTCTTGAGTCGTAGTTTTACTAGAACTTGTCCATCAGAAGGTTCTACAACAAGAAGAAATGTTGATGAAGGTACAGCCAGAGAAAATAATCAAAACATAGGATTAAAAGATGGCGCAGATAACCATGGAGAAATCTCAAAGACATCTTCTTCTATGTGTGTTGATGATGAGTATATATTTTATGATTAA 1125 0.3831 MIRGYRCGFLYDLLIGIYGCPLPPSVCLIVGGIILFMERKVKHDSSGPENSSCKKKLSGYHTILWFPLVQAVLPDRESLVKNCSRFVLVLWLILVFVLMQSYTACLSSILTVHHLQPYYPSEFDVINDPNVKIGYQGGSFIKGLLLESLNVDKSRVKNYSTIEQYKDALDKGSHKGGVDAIFDEVPYIKIFLKKYDSKYAMIGTRHRTDGFGFAFPKGSTLTSHFSRAVLYVRENIEMDEIEEKYFGSSNNDDEGQDISNSSLDDSSSSRLSTYSFAGLFILIGVLSLLALAVSESYIWRKPVMLAKTYSRQVLSRSFTRTCPSEGSTTRRNVDEGTARENNQNIGLKDGADNHGEISKTSSSMCVDDEYIFYD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01117 374 MobiDBLite consensus disorder prediction 338 360 - -
Accr12g01117 374 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 301 IPR015683 -
Accr12g01117 374 SMART GluR_14 27 248 IPR001320 GO:0015276|GO:0016020
Accr12g01117 374 MobiDBLite consensus disorder prediction 251 269 - -
Accr12g01117 374 Gene3D - 212 246 - -
Accr12g01117 374 Pfam Bacterial extracellular solute-binding proteins, family 3 128 247 IPR001638 -
Accr12g01117 374 SUPERFAMILY Periplasmic binding protein-like II 129 248 - -
Accr12g01117 374 MobiDBLite consensus disorder prediction 246 269 - -
Accr12g01117 374 Gene3D - 25 142 - -
Accr12g01117 374 FunFam Glutamate receptor 163 211 - -
Accr12g01117 374 Pfam Ligand-gated ion channel 27 284 IPR001320 GO:0015276|GO:0016020
Accr12g01117 374 Gene3D - 159 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01117 Accr-Chr12 12282961 12284979 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01117 28 332 Ion Channels AT3G51480 34.304 4.57e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01117 K05387 - pcin:129319703 349.362