Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01114 ATGGTAAACTCAAATTACCATTTCTATGGCTATAAGTACGTTGCCATGATAATTTTTGCAGTGTTGTTATTAATAGCTCAGTTTGGAGCAGGCGATGATGGAGCCCTAGGAGGCAAGAAGTTCATAATTGGACTTCCTAAGACATCAGGCTTCACTCAGTTTGTTGATTTACAACTCAATTCAAGTAATAAGAGTCAGGTCCTCAAGGCCACAGGCTATTCCATTGAAGTCTTCGAATCTGCAATATCTTACCTTAAGAGTTTAGGTCAAAATATTTCTTACGAGTATAGAGCTTTTGTTGACGAAGATGGAAACAGTGCTGGGGATTACAACGAACTCATCTATCAGATTTATGAAGGAAAGTATGATGCTGTGGTGGGAGACGTGGCAATTGTGGCGAATCGGTCAAATTACGCAGATTTTGCTTTGCCGTATGCGACGTCGAATGTGGAGATGCTGGTGAGGGTTCGTAAGGATCCACGCTTGAATGTGTGGATTTTTGTACAGCCTTTTACTTGGGATCTGTGGTTGTCTATAGTCATATTCAGTATTTCTATTGGAGGGATCATATTGTTAATGGAGCATGCTACCGAAGAAGAATCAACACTTGAAAATTCACCATCTGGGAAACAACTCAGCAAGTTTTCTATCCTGTGGTTTCCTTTGATGCAAGCAGTTCTTCCTGAAAGAGAATCAGTGTCCAAAGCATGCTCAAGGTTTGTGTTGGTGTTATGGTTGTTACTAGCATGTGTGCTGATGCAAAGTTACACGGCCAGTTTATCATCGATATTGACAGTACATCAGTTGCTACCTACGTATCCGAGTGAAAATGATGTTATAAATAACCCCAACATTAACATTGGATATTCTGATGGCTCATTCTTAAGAGGTTTATTTGTAGATGACTTGAAGATCGATAGTAGGAGGTTAAAAAACTACTCCAATGTTAAAGAGTATAAGGAGGCTTTGGACAAGGGAAGCCGTAGAGGTGGTGTTGACGCTATTTTTAGTGAAGTTGTCTTCTTTAAGATCTTCCTCGAGCAATATGGTTCTAATAATTATGCCTTGGTCAGAACTAGGCACCGCGATGCTGGATATGGTTTTGCATTCTCAAAAGGCTCTAACTTAACCTCATACTTCTCTAGAGCCATATTGAATGTGAGTGAGGGTGAAGAAATGGACCGCATTGAGCGGAAATATTTTGGAAGCAATTATGATATTAAAGGGCAAGACCTATCTTCTGATGCATCATCAGACAATAATAATGCAAGCGCTAGCCTTACCGCTTATAGTTTTGCAGGTCTATTCATGGTAATCGGAGTGCTTTCACTCTTAGCTTTACTAGTTTCTCAAAGTCGTGTTTGGAAAAAACCTGTCAAAGTAGCAAGAACATGTAGCCAACAGTTGTTGAGTCAGGGTTTTAAAAGAACTAGTTCCATAATGCGAAGGTTCTCTCCATAG 1461 0.3997 MVNSNYHFYGYKYVAMIIFAVLLLIAQFGAGDDGALGGKKFIIGLPKTSGFTQFVDLQLNSSNKSQVLKATGYSIEVFESAISYLKSLGQNISYEYRAFVDEDGNSAGDYNELIYQIYEGKYDAVVGDVAIVANRSNYADFALPYATSNVEMLVRVRKDPRLNVWIFVQPFTWDLWLSIVIFSISIGGIILLMEHATEEESTLENSPSGKQLSKFSILWFPLMQAVLPERESVSKACSRFVLVLWLLLACVLMQSYTASLSSILTVHQLLPTYPSENDVINNPNINIGYSDGSFLRGLFVDDLKIDSRRLKNYSNVKEYKEALDKGSRRGGVDAIFSEVVFFKIFLEQYGSNNYALVRTRHRDAGYGFAFSKGSNLTSYFSRAILNVSEGEEMDRIERKYFGSNYDIKGQDLSSDASSDNNNASASLTAYSFAGLFMVIGVLSLLALLVSQSRVWKKPVKVARTCSQQLLSQGFKRTSSIMRRFSP 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01114 486 Pfam Ligand-gated ion channel 403 440 IPR001320 GO:0015276|GO:0016020
Accr12g01114 486 Gene3D - 165 291 - -
Accr12g01114 486 SUPERFAMILY Periplasmic binding protein-like II 14 404 - -
Accr12g01114 486 Gene3D - 367 401 - -
Accr12g01114 486 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 457 IPR015683 -
Accr12g01114 486 Pfam Bacterial extracellular solute-binding proteins, family 3 101 402 IPR001638 -
Accr12g01114 486 Gene3D - 34 164 - -
Accr12g01114 486 SMART GluR_14 40 403 IPR001320 GO:0015276|GO:0016020
Accr12g01114 486 Gene3D - 311 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01114 Accr-Chr12 12104221 12108039 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01114 38 449 Ion Channels AT2G29120 38.835 1.76e-76 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01114 K05387 - pcin:129319703 556.214