Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01107 ATGGCCATGCGCTGCATACAAATGGCTCATCAAGATTTCTATAAAAACTATTCTCACTACCAAACAAGGCTTGATCTTCGAATCAGGGATTCTGAGAATGATGTCGTCAAAGCAGCATCTGCAGCTTTCGATTTGATGAAGAATGAGAAGGTGCATGCAGTTATCGGACCTTTATTTTCAGAACAAGCGAGGTTCATAATACAACTTGGGCAGAAATTTCGTGTGCCCATCGTGTCGTTTTCAGCCACAAGTCCATCTCTTCCTCCAATCCGAAGCAAATATTTCATAAGGACAGCACAAGATGATTGCTCACAGGTGGAGGCTATAGCCGCCATTGTTGAAGCTTATGGATGGCACGAAATCATCCCAATCTACGAAGACACCGAATACGGCAACGGTCTGATCCCACATGTCACAGACGCCTTGGAAAAAGTAAACACAAGAGTGCCATACAGAAGTGCCATCAATCCAAATTCTGAGGAATCCGAAATCTTAGAGGAGCTGAAGAAGTTAAATCAAAGTGGAAAAAGAATATTTCTTGTTCACATGACTGGTCTTGTTGGGCACAAATTCTTCTTAGCCGTGAACAAAGCTGGAATGATGAGGGAAGGATATGGGTGGGTAGTCACCGAGGGGTTATCTAATGTGTTAGACCCTAATTTGGGTCCACAAGCGATGGATTCTATGCAAGGTGTCTTAGGGGTAAGGCCAAAAGTGGAGAAGTCTACAAGTTTCAGAAATAGATGGAAAGCTTCGTCAACTAAACAAGGTGGTGTGTCTTCTCCTTTAACCCTGTTTGGACTTTGGGCTTATGACACAATTTGGGCAATGGCCATGGCAGTAGAGTCTACGTTTACAAATCCTAAGGGTAATGAGACACTGGTAGATAGAATCCTAAGTACTAAATTTGAAGGCCTCTCTGGGTATTTCAATTTGAGTGAAAGGAAACTCAAACCCTTAGAGTTTGAAGTATTCAATGTGGTAGGACGCAAAGAGAGGGTCATTGGACATTGGAGCCCACAGAGAGGACTATTCCACGACAATAATTGGAATTCAAGAGAGAAACTAAAGCCACCAATATGGCCAGGGGACACAACAAATCAACCAACCAAGTTGAGAATTGGGGTTCCAATAAGAAAGGGTTTTGTTCAATTTGTGAAGGTGGAAACATGGTCTTCTTCGAATGTTACTCCTCCAGATGTTTCTGGCTTTACTATTGATGTGTTCCTCGAAGTGGTCAAAGCTTTACCTTTTCCTCTTCCATTTGAGTTTCTCCCATTCAAGATTGATAATGGAGAAATTAAGGAGTATGATGCTGTAGTTGGAGACATAACAATTGTAGCTAGCCGTGCGGAACATTTTGACTTTACGTTGCCATATTCAGAATCAGGAGTGTCAATGGTAGTTTCGATGAAGCCTGATGAGAGACAAAACATGTGGATATTCTTAAAGCCGTTGAGTCCAAGTCTTTGGCTGACCACAGCTGCAGCATTCGTCTTCACAGGTATCATCATATGGCTTCACGAACGTCGTACCAACGCAGAATTCCAAGGATCCCCACAGCAACAACTTGGGATGATGTTCTGGTTTTCTTTCTCCACCTTAGTCTTCGCTCACAAGGAAAGGTTAGTGAACAATTGGTCGCGTTTTGTGCTGATCTTGTGGGTATTTGTGGTGCTCATCATAACACAAAGTTATACTGCAAGTTTAGCTTCCATGTTAACTGTACAGAGATTGCAGCCGAAGTTCATGAATGTGAATGTGATAAGAAAGAATAATTACTGTGTGGGGTATCAGAAGGGCTCCTTCGTCAAGATGCTTCTGAAAAATCAATTGGGATTCGTGGATGAGACAAAGTTGAAGCCATATGAGACGCCTGAAGAGTATGATCGAGCTCTCTCTAGTGGTGTGGTTGCTGCTGTGTTTGATGAAGTCCCCTACTTGAAGATCTTCCTCACAAAATACGGCTCCAACTCCAAGTATGTCATGGTGGGGCCAACCTACAAAACTGGTGGATTCGGCTTTGCATTTCCACTAAAATCTCCGTTGGTGTCTTACTTTTCAAGGGCAATCCTAAATGTGACTCAAGATGAAGAAAAATTTGACAGGATTAGGAGCAAGTACTTCTCAAGCGAAATCATATCTGAAGAATATGGAAGTGGACCATCAATTCCACAAACTCAGGCTAGTCTCACTCTGTCCAACTTTGGAGGGCTTTTCATCATCACAGGCGTCACTTCTGGGATTTCACTTCTCTTCTATTTGTTCAAGTTTGTGTACTCTTTTTCAGAGGAAAGATCATCTCTTTGGTTGTTGCAGTTAAAGGCTCAAATAGTGAAGTGCTTGGATCGAAGGGATAGCTCTTTATCTTATGAATAG 2379 0.4237 MAMRCIQMAHQDFYKNYSHYQTRLDLRIRDSENDVVKAASAAFDLMKNEKVHAVIGPLFSEQARFIIQLGQKFRVPIVSFSATSPSLPPIRSKYFIRTAQDDCSQVEAIAAIVEAYGWHEIIPIYEDTEYGNGLIPHVTDALEKVNTRVPYRSAINPNSEESEILEELKKLNQSGKRIFLVHMTGLVGHKFFLAVNKAGMMREGYGWVVTEGLSNVLDPNLGPQAMDSMQGVLGVRPKVEKSTSFRNRWKASSTKQGGVSSPLTLFGLWAYDTIWAMAMAVESTFTNPKGNETLVDRILSTKFEGLSGYFNLSERKLKPLEFEVFNVVGRKERVIGHWSPQRGLFHDNNWNSREKLKPPIWPGDTTNQPTKLRIGVPIRKGFVQFVKVETWSSSNVTPPDVSGFTIDVFLEVVKALPFPLPFEFLPFKIDNGEIKEYDAVVGDITIVASRAEHFDFTLPYSESGVSMVVSMKPDERQNMWIFLKPLSPSLWLTTAAAFVFTGIIIWLHERRTNAEFQGSPQQQLGMMFWFSFSTLVFAHKERLVNNWSRFVLILWVFVVLIITQSYTASLASMLTVQRLQPKFMNVNVIRKNNYCVGYQKGSFVKMLLKNQLGFVDETKLKPYETPEEYDRALSSGVVAAVFDEVPYLKIFLTKYGSNSKYVMVGPTYKTGGFGFAFPLKSPLVSYFSRAILNVTQDEEKFDRIRSKYFSSEIISEEYGSGPSIPQTQASLTLSNFGGLFIITGVTSGISLLFYLFKFVYSFSEERSSLWLLQLKAQIVKCLDRRDSSLSYE 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01107 792 SMART GluR_14 371 711 IPR001320 GO:0015276|GO:0016020
Accr12g01107 792 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 764 IPR015683 -
Accr12g01107 792 CDD PBP1_GABAb_receptor_plant 1 345 IPR044440 -
Accr12g01107 792 Gene3D - 15 106 - -
Accr12g01107 792 FunFam Glutamate receptor 101 257 - -
Accr12g01107 792 Pfam Receptor family ligand binding region 4 328 IPR001828 -
Accr12g01107 792 Gene3D - 107 267 - -
Accr12g01107 792 SUPERFAMILY Periplasmic binding protein-like I 3 339 IPR028082 -
Accr12g01107 792 FunFam Glutamate receptor 479 609 - -
Accr12g01107 792 PIRSF IGluLR_plant 1 778 IPR017103 -
Accr12g01107 792 Pfam Bacterial extracellular solute-binding proteins, family 3 401 710 IPR001638 -
Accr12g01107 792 Gene3D - 376 478 - -
Accr12g01107 792 Pfam Ligand-gated ion channel 711 745 IPR001320 GO:0015276|GO:0016020
Accr12g01107 792 SUPERFAMILY Periplasmic binding protein-like II 368 711 - -
Accr12g01107 792 CDD GluR_Plant 371 709 - -
Accr12g01107 792 Gene3D - 268 375 - -
Accr12g01107 792 Gene3D - 479 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01107 Accr-Chr12 11818219 11821753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01107 1 760 Ion Channels AT2G29120 43.123 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01107 K05387 - qsa:O6P43_022275 866.3