Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01099 ATGCCTCCTCTTAATCCTCCTGTTCATCACCATGAACAAAACCAACCAAAGTCCCGCCCCAAGCTCCTCTCAATCCTTTTTAAGGCCATCGTTATGATCGTTCTCACCTCCTTCTTTTTCATTTTTCTCAGTGTCGCTGCCTTAGTCCTCCTCCATCTCTGCTTCATCGCCGACATCATCCACCGCGTCCGCTCCCGCCCCACGATCCAACTCGGAGCTTCATCCAATGAAATCGCGCCGCTTGACGTCAAGAAGCTTCCCGAATTCCGGGTTACTAGCGGAACCGAACCCGGACCCGAAACGGAATGCGTTGTCTGCTTGGATGGCTTCAGGAGCGGCCACTGGTGCAGAAAGCTTGCCGGATGTGGTCATTTGTTCCACCGGAAATGTGTGGATGCGTGGCTGGTGAAGGTGGCTGCGTGTCCCACATGCAGGACACCTGTTCGATTAAATGCAGGGAGGGATGTTGTAGGTTCGGCTCTAGAGGCCAATAGAGAGGTAGGGACAGTGCTTTCTGGATTTTTTAGCTTGTAA 534 0.5262 MPPLNPPVHHHEQNQPKSRPKLLSILFKAIVMIVLTSFFFIFLSVAALVLLHLCFIADIIHRVRSRPTIQLGASSNEIAPLDVKKLPEFRVTSGTEPGPETECVVCLDGFRSGHWCRKLAGCGHLFHRKCVDAWLVKVAACPTCRTPVRLNAGRDVVGSALEANREVGTVLSGFFSL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01099 177 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Accr12g01099 177 SMART ring_2 103 144 IPR001841 -
Accr12g01099 177 SUPERFAMILY RING/U-box 102 151 - -
Accr12g01099 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 152 IPR013083 -
Accr12g01099 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 155 - -
Accr12g01099 177 Pfam Ring finger domain 102 145 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01099 15 150 C3H Transcription Factor Family AT2G18670 40.876 7.81e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01099 - - qsa:O6P43_002922 192.586