Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01098 ATGGGAAGAAGCAGAAACTTATTAGAAGTGAAAGGAGCAACCTTTTTGTCTCCCCCGCCGCCGCCATACTGGCTATCGCCTCCCAACAATGTTGTCGGATCTGAGGATTCCAATGTAAAAGACAACGTAAGCCCCAGCGTACTCCTCATCATCATCATCCTCGCCATCGTCTTCTTCGTCTCTGGTTTGCTCCACCTTCTTGTTCGCTATCTATGGCGACCACAAACCAGAGACCCAGACGATTTAGACGATGTTACTGTTCTTCAGGGTCAGCTTCAACAACTTTTTCACCTCCATGATTCTGGGGTCGACCAATCCTTCATCAACACCCTCCCTGTTTTTCTCTACAAGGCTATCATCGGACTCAAGAACCCTTTCGATTGCGCCGTTTGTCTGTCGGAATTTGAGCCGGACGACAAGCTCCGATTGTTGCCCAAATGCAGCCACGCGTTTCACATGGAGTGTATCGACACGTGGCTCTTGTCTCACTCCACGTGTCCTATCTGTCGAGCTTGCTTGCTCAGTGATTTCTCCTCCAGCAACGCTTGTTCCCCCACTGTTCTGGTCCTTGAATCTGGGAGTGACAACAACTCCAGAGAGATTGACCCGGAAACCGACGAACTCGAGTTCGGATCGACCCGGTTCGACTTGAATGAGGATTCCGGGGAAGTGGTTACGGTGAAGCTGGGAAAGATCAGGAATGTGGATAACAACAATGGCGAAGGTAGTAGCAGAACTGGTGATTTTAACGATAATGCAGAAGCTAGAAGGTGTTTCTCTATGGGGTCTTTTGCTTATGTGATGGATGAAAGCACTTTGCTTCATGTACCCATTAGAGCACAAATAAAAAAGAAGCATGCTTTGTATTTGAATCCAGGAAACAGACTTGCAGTGTCAGAGTATGACTGTGAGTCGAGGAGGGATTTCAGGTTCTCTAGTTTAGAAGGGAACAGATTTGAAGAAGCAGCAAAATGTTCAAGCTCTGGTGTTATAACCAGAAAGGAGAGCTTGTCGGTGTCGAAGATTTGGCTTCGGGAAAAGAAAGAGAAGCGAATAAATCGGCTTGAGGATTCGACGAGGAGGGCTGTGTCGTTTAGGCTTCCATTCCAGAGAAATGATGAAGAAGATGAAGATGGTGGTGGTGGTTTGAAGGAGAGGAATGTGAAATTGGGATCGAGAAGTACGATCTCTGATATGGATATTACAAACTGGGACGAAAATAATGGAGGAGGAGGAAGTAGTGAATATGGATATGATGATGAAAACCAGAGCTGTTACAGTGTAGATTCTTCTCAGGTTATTAGAGCTCCTTCATTTGCAAGAAGAACTCTGCTTTGGCTCACAGGAAGACAACATCATCAAAACAAGGTTGTTCATTCAGCCTCTGTTTCTGGAGATTAG 1401 0.4611 MGRSRNLLEVKGATFLSPPPPPYWLSPPNNVVGSEDSNVKDNVSPSVLLIIIILAIVFFVSGLLHLLVRYLWRPQTRDPDDLDDVTVLQGQLQQLFHLHDSGVDQSFINTLPVFLYKAIIGLKNPFDCAVCLSEFEPDDKLRLLPKCSHAFHMECIDTWLLSHSTCPICRACLLSDFSSSNACSPTVLVLESGSDNNSREIDPETDELEFGSTRFDLNEDSGEVVTVKLGKIRNVDNNNGEGSSRTGDFNDNAEARRCFSMGSFAYVMDESTLLHVPIRAQIKKKHALYLNPGNRLAVSEYDCESRRDFRFSSLEGNRFEEAAKCSSSGVITRKESLSVSKIWLREKKEKRINRLEDSTRRAVSFRLPFQRNDEEDEDGGGGLKERNVKLGSRSTISDMDITNWDENNGGGGSSEYGYDDENQSCYSVDSSQVIRAPSFARRTLLWLTGRQHHQNKVVHSASVSGD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01098 466 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Accr12g01098 466 MobiDBLite consensus disorder prediction 399 418 - -
Accr12g01098 466 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 40 343 - -
Accr12g01098 466 CDD RING-H2_EL5-like 127 170 - -
Accr12g01098 466 SMART ring_2 128 169 IPR001841 -
Accr12g01098 466 MobiDBLite consensus disorder prediction 368 384 - -
Accr12g01098 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 176 IPR013083 -
Accr12g01098 466 MobiDBLite consensus disorder prediction 368 389 - -
Accr12g01098 466 Pfam Ring finger domain 127 170 IPR001841 -
Accr12g01098 466 SUPERFAMILY RING/U-box 107 177 - -
Accr12g01098 466 FunFam E3 ubiquitin-protein ligase ATL6 91 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01098 Accr-Chr12 11624059 11625459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01098 37 351 C3H Transcription Factor Family AT2G18650 48.127 2.42e-76 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01098 - - pcin:129319707 657.907