Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01080 ATGGCTCTTCCTTGGGTTTATCTTCTCTTCCTTCTCTCTTGTTCTGTACTCTGTTTCTCTTACGAGCCTCGTAACCATGAAGTGGAGGCTTTGATAAGCCTAAGAGTATCCCTGGATGATCCTCATGGGGTATTAAGCAACTGGGATGAGAACTCTGTAGACCCTTGTAGTTGGGCTATGATCACTTGCTCTTCTGATTCACTTGTTATAGGCTTGGGAGCTCCAAGCCAATCTCTTTCTGGAACCTTATCTGCTGCCATAGGAAATCTGACAAATCTTCGACAAGTGTTACTGCAGAACAACAATATATCTGGCCAAATCCCACCGGAACTTGGCACCCTTCCTAAGCTACAGACTTTAGATCTTTCTAATAATCAATTCTCTGGTGTGATTCCCAGTTCCTTAAGTCACTTGGGTGGTCTTAAGTACTTGAGGCTAAACAACAATAGCTTGTCTGGTCCCTTTCCCGTCTCACTAGCCAAAATCCCTCAACTTGCTTTCTTAGACTTGTCCTATAACAATCTCAGTGGACCTGTGCCCAAGTTTCCAGCTCGATCTCTCAATGTTGTGGGAAATCCATTAATTTGTGGAAGCAGCTCTACTGAAGGTTGCTCGGGATCAACAACCCTCTTGCCTATTTCGTTCTCTCTTCCATCTTCACAAGGAAAGCACAAGTCCAAGAAAATAGCAATTGCACTTGGAGTCAGCCTTAGCTTTGCTTGTCTCATACTGTTGTCTTTAGGGCTCTTCTGGTATAGAAAGCAAAGACAGCACCGAGCACTTTTGTATATCAGTGATTATCAGGAAGATGGACTTGTTCGCTTGGGGAATCTCAATATTTTCACTTTCAAACAGCTCCAACATGCAACAGATAGTTTCAGCACTAAGAACATACTTGGTGCTGGGGGGTTTGGCAATGTGTATAGGGGCAAGCTCGGAGATGGGACACTGGTTGCTGTGAAGAGGTTGAAGGATGTCACGGGAAGCGCCGGGGAATCTCAGTTTCGAACTGAATTGGAGATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAGAAGCTTCTGGTTTATCCTTACATGTCTAATGGAAGTGTCGCATCCAGACTTAGAGGCAAACCTGCTCTAGATTGGAACACAAGAAAGAGGATAGCGATTGGAGCTGCTAGAGGTCTTCTGTATCTACATGAGCAGTGTGATCCAAAGATAATACATAGAGATGTTAAGGCTGCTAACGTGCTTCTGGATGAGTACTATGAAGCCATTGTTGGTGATTTTGGCCTTGCTAAGCTCCTTGATCATGCTGATTCTCATGTCACTACTGCTGTTCGTGGCACTGTGGGCCACATCGCGCCGGAGTACCTCTCCACCGGCCAATCATCTGAGAAAACTGATGTATTTGGATTCGGCATTCTCTTGTTGGAGCTCATAACTGGAATGACTGCTCTTGAGTTTGGAAAAACAGTGAATCAGAAAGGTGCAATGCTAGAGTGGGTGAAGAAAATACAGCAAGAAAAGAAAGTGGAAGTGTTAGTGGACAAAGAGTTAGGAAGAAACTATGATAGGATAGAGGTGGGGGAGATGCTTCAAGTAGCTATACTTTGCACACAGAATCTACCGGTTCACCGCCCCAAAATGTCAGAAGTGGTTAGAATGCTCGAAGGCGATGGCCTTGCCGATAAGTGGGCAGCTTCACAGAATCATAATAATAATAATCTCAATCTGAACAACTTCTTTCACAGCCACAGTAACAATAGTTCATCTTCAGGCCCAAGCACTACCCTTGCTTCAAAACATGGTGATGATAATAATAATAATGCTCACGATCGTCCCAGCATGTTTGGCATGGGAATAGATGGTGATGATGAGGATGAACACTCTTTGGATTCCTATGCCATGGAACTTTCTGGTCCTAGGTAA 1947 0.4417 MALPWVYLLFLLSCSVLCFSYEPRNHEVEALISLRVSLDDPHGVLSNWDENSVDPCSWAMITCSSDSLVIGLGAPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGQIPPELGTLPKLQTLDLSNNQFSGVIPSSLSHLGGLKYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPVPKFPARSLNVVGNPLICGSSSTEGCSGSTTLLPISFSLPSSQGKHKSKKIAIALGVSLSFACLILLSLGLFWYRKQRQHRALLYISDYQEDGLVRLGNLNIFTFKQLQHATDSFSTKNILGAGGFGNVYRGKLGDGTLVAVKRLKDVTGSAGESQFRTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDEYYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVKKIQQEKKVEVLVDKELGRNYDRIEVGEMLQVAILCTQNLPVHRPKMSEVVRMLEGDGLADKWAASQNHNNNNLNLNNFFHSHSNNSSSSGPSTTLASKHGDDNNNNAHDRPSMFGMGIDGDDEDEHSLDSYAMELSGPR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01080 648 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 206 - -
Accr12g01080 648 Gene3D Transferase(Phosphotransferase) domain 1 370 582 - -
Accr12g01080 648 MobiDBLite consensus disorder prediction 582 610 - -
Accr12g01080 648 Pfam Protein tyrosine and serine/threonine kinase 295 562 IPR001245 GO:0004672|GO:0006468
Accr12g01080 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Accr12g01080 648 ProSiteProfiles Protein kinase domain profile. 293 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01080 648 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Accr12g01080 648 SUPERFAMILY Protein kinase-like (PK-like) 276 563 IPR011009 -
Accr12g01080 648 SMART LRR_typ_2 114 137 IPR003591 -
Accr12g01080 648 SMART LRR_typ_2 138 169 IPR003591 -
Accr12g01080 648 SMART LRR_typ_2 90 112 IPR003591 -
Accr12g01080 648 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Accr12g01080 648 SMART serkin_6 293 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01080 648 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 573 - -
Accr12g01080 648 FunFam Somatic embryogenesis receptor kinase 1 263 369 - -
Accr12g01080 648 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Accr12g01080 648 MobiDBLite consensus disorder prediction 582 648 - -
Accr12g01080 648 SUPERFAMILY L domain-like 25 198 - -
Accr12g01080 648 PRINTS Leucine-rich repeat signature 162 175 - -
Accr12g01080 648 PRINTS Leucine-rich repeat signature 117 130 - -
Accr12g01080 648 CDD TM_EGFR-like 226 259 - -
Accr12g01080 648 Gene3D Phosphorylase Kinase; domain 1 263 369 - -
Accr12g01080 648 FunFam Somatic embryogenesis receptor-like kinase 1 370 582 - -
Accr12g01080 648 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01080 Accr-Chr12 11434307 11438656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01080 8 508 Receptor kinase-like Gene Family AT2G23950 76.447 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Accr12g01080 Pkinase 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01080 - - zju:107425827 989.949