Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01078 ATGCCAGATTTAGGTAGCTTATCGATATCAGAAGCTCTTGAGCTTCCTAAATGCCCTAATCTGAATGCCCCTGCCGAACCATCTGATATTACCAGTTCTTTGTACACAGTCCCAGTTAAATCCCTTGGTAATTGTTACATTTCCAACCACAATCTTCTATTCCCTGTTCTTCAGCAGGATGAAGCCCAGAGTGGAAATGAATTCAGGGTTTCAAAGCGGAGCCGTGGTTCTTTGGATCGGGTCAATAAGGCAGCCAACGACAGGGGTTCAGAGGATCATGTTAAAGATTGGTCTGAGAAGAAGATAGATTCCGGGCTTTGTAGGCTCAGCTGCACTCTTCCATTTCTTGTTGGCGCTCCGAAGATGGTTGAATGTCTTTTTTGTCATCATTTTGTCTACCCCGGGAAGGAGGTTATATGTTCTGTTCGTGGCTGTGAAAGAGTCTACCATATGGAATGTGCAAAAGAAGCTAATGGGATCTCAAATCTCAAAAAATTCAAGTGCCCTCATCATGCTTGCTTTATTTGTAAACAAAAAGTACACTTGCGGTGTGAGCGTTGCACAACGGCATTTCATACTAAATGCGCACCGTGGCCAGATGGTGTAATGCTTTCAAAGGATCATCCTGGACGAGTTGTTTGTTGGAGGCATCCTACTGATTGGCGGTTGGATAGAAAGCATGAAGCTTCAACAAGTAACATGGAGGAAGTGTTTTGCCGTTTGCCTCTTCCTTATGTCAATGAGGAGTTCAAGATTGATTTCACGTGGAAAGACATGGAGAGTAAGCTTGAACCACCTCCATATGTACACATAAGACGCAATGTATACCTCGTGAAGAAGAAGCGCAGTGATTCAGATGATGGCGCAGGGTGCACCAGTTGCTCTTCTAATTCCACATGTTCTGATGATTGCGTGTGCAGAGTTCAATGCATAAGCTGCTCTAAGGCTTGTCGCTGCTCAGAAAATTGCAATAATCGGCCATTTCGCAAGGATAAAAAGATCAAGATTGTCAAGACTGAACTTTGTGGTTGGGGAGTAGAGGCTGCTGAAACCATAAAAAAAGGCGAATTTGTAATTGAATATATTGGAGAAGTAATAGACGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAATACAAAGGTGAACAGAATTTTTATATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATACATCACGCTTTTTAAACCATAGCTGCGACCCCAACTGTGTTTTGGAGAAGTGGCAAGTTGATGGTGAAACACGCGTGGGTATTTTTGCCGCCCGCTCAATAGAAGTTGGAGAACCGTTAACATACGATTACAGATTTGTGCAATTTGGACCAGAGGTAAAATGCCACTGTGGTGCTCCAAATTGTCCAGGCTTTCTAGGGACCAAAAAGAAGATTGAGAAGGTGAAACTTTGCTGGGGCTCAAAAAGGAAGAGAACATGTGTTACAGTGGGGACCAAAAAGGGAACTTCACCTGCTTGCATTGCAATAGTAACAGCTGTTTGA 1536 0.4297 MPDLGSLSISEALELPKCPNLNAPAEPSDITSSLYTVPVKSLGNCYISNHNLLFPVLQQDEAQSGNEFRVSKRSRGSLDRVNKAANDRGSEDHVKDWSEKKIDSGLCRLSCTLPFLVGAPKMVECLFCHHFVYPGKEVICSVRGCERVYHMECAKEANGISNLKKFKCPHHACFICKQKVHLRCERCTTAFHTKCAPWPDGVMLSKDHPGRVVCWRHPTDWRLDRKHEASTSNMEEVFCRLPLPYVNEEFKIDFTWKDMESKLEPPPYVHIRRNVYLVKKKRSDSDDGAGCTSCSSNSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKDKKIKIVKTELCGWGVEAAETIKKGEFVIEYIGEVIDDALCEKRLWDMKYKGEQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGIFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAPNCPGFLGTKKKIEKVKLCWGSKRKRTCVTVGTKKGTSPACIAIVTAV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01078 511 Pfam SET domain 343 448 IPR001214 GO:0005515
Accr12g01078 511 SMART PostSET_3 455 471 IPR003616 -
Accr12g01078 511 Gene3D SET domain 246 490 IPR046341 -
Accr12g01078 511 FunFam Histone-lysine N-methyltransferase 245 481 - -
Accr12g01078 511 PANTHER SET DOMAIN PROTEINS 77 489 - -
Accr12g01078 511 SUPERFAMILY SET domain 257 468 IPR046341 -
Accr12g01078 511 ProSiteProfiles AWS domain profile. 286 332 IPR006560 GO:0005634|GO:0042054
Accr12g01078 511 ProSiteProfiles Post-SET domain profile. 455 471 IPR003616 -
Accr12g01078 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 222 IPR013083 -
Accr12g01078 511 CDD SET_ASHR3-like 333 471 - -
Accr12g01078 511 ProSiteProfiles SET domain profile. 332 449 IPR001214 GO:0005515
Accr12g01078 511 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 502 IPR025787 -
Accr12g01078 511 SMART set_7 332 455 IPR001214 GO:0005515
Accr12g01078 511 SMART PHD_3 124 172 IPR001965 -
Accr12g01078 511 SMART PHD_3 173 218 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01078 Accr-Chr12 11379096 11384142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01078 313 470 C2H2 Transcription Factor Family AT2G23740 36.872 2.44e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr12g01078 SET 7.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01078 - - qsa:O6P43_022233 796.578