Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01058 ATGTTTCTAATTTTCTGTCTTATCGTTTTTCGCTTTGGTGGGGTTTATGGTGGCGAAGAAAATGCCCACAAGGTGAATGATGAAAGTTCACTGAGAAGTTTCATGTCAGGAATTGTTTCAGACCCAGAAAACTCCCTGGCTACTTGGAGGTCTTCTGGTGTTCCATTTTGTAATTGGTCGGGAATTGTATGTAACAATGTGAGTGGGAAAGTAACAGAGATTCATCTTGGAAGGAGGTCACTAGGGGGTACAATTTCCCCTGCTATTGGTAACCTCTCTGATTTGAAAATTCTTGTTCTTTCTGAAAACTTTTTTAGGGGTAATATCCCAAGAGAGTTGGGAAGTTTAATTCAGCTTGAAAAACTCAGTTTGTATTGGAATCTTCTAGAAGGGAAGATCCCCTCGGAGCTGGGTTCACTTCAAAACTTACACCACCTAGACATAGGAAGTAATAGGCTTGGGGGTGTGATTCCAGCTTCATTGTTCTGCAATTTGTCATCTTCATTGACAAATTTAGACCTCTCTAACAATTCATTAGTTGGACAAATCCCCTTGAATAATGAGTGTGTGCTTCATGAGCTTAAGCATCTCTTAGTTTGGTCTAACCATTTTGTAGGACAAGTTCCTCTTGCTCTTTCAAACTTCACAAAACTAGAATGGCTTGATTTGGGGTCAAACAGGTTTAGTGGTGAGCTACCATCAGAGATTGTAGGTAATTGGCCATACATACAATATCTCTACTTATCCTCCAATGGCTTTGTTGCCCATAATAATAATACCAATCTTGAACCATTCTTTGCTTCCTTAGTGAATTTGTCCAACCTTCAAAATCTCGAATTAGATGGAAACTACCTTGGAGGGAAGCTGCCTCATATAATTGGAGATCTTCCAACATCATTAATGCAGCTTCATCTTGAGGGTAATCTCATACATGGTTCCATTCCCTCAGACATCGCCAAACTTTTCAATCTAACTCTATTAAACTTGTCCAATAACCAACTAAATGGATCAATCCCTCCAAACCTATCCCTGATGAGTAAGCTTGAGAGAGTCTTTTTGTCCAATAATTCATTATCTGGTGAGATTCCTTCAACCCTTGGTCAAATTCCACATCTGGGTCTGCTAGATTTGACAAGAAACAAGCTTTCTGGTTCAATACCAGATAATTTTTCCAATCTTTCCCAGTTAAGAAGGCTTTTACTTTATGATAACCAGCTTTCTGGAACAATACCACTAAGCCTTGGAAAATGTGTCAATTTGGATATTTTAGACCTATCTCACAACAAGATTTCAGGGGTGATTCCTTCAGAAGTTGCAGCCTTAAGTAACTTGAAATTATACTTGAATTTGTCAAACAATAAATTAGATGGGCCTTTGCCATTAGAACTCAGCAAAATGGACATGGTTCTAGCCATCGATCTATCTATGAACAACCTCTCCGGTAGAATCCCACCACAGTTTGAAAGTTGCATAGCACTTGAGTACCTTAACCTGTCGGGTAATTCTTTAGAAGGCCCTCTTCCATATTCTTTAAGCCAACTGCTTTCCATTCAAACACTGGACGTGTCTCTGAATCGATTGACTGGGGAAATACCTCAATCCCTGCAGTTATCTTCTACTCTCAAAGAACTCAATTTCTCTTTCAATAAATTCTCGGGGAGCGTATCAATTGAGGGAGCTTTTTCATCTCTCACCACAGACTCTTTCCTAGGAAATGATGGCCTTTGTGGCTCTGTAAAAGGCTTGCCTAGCTGCCATAAGAAACATAGCAATCATTTGATTATCTTGTTAATTTTGGTGTTACTCTTTGGCACCTCCATGTTCTACATGTTTAGGCTCAATACTGGAGTCCGAAAGAGACTGGCCATTGCTAGCATGGGAAACTTGAAGCGTGAAGAGGAACGAAAAGAACTCAATTACCCAAGAATTTCACATAAACAACTTATTGAAGCCACTGGGGGCTTCAATGCTTCAAACTTGATTGGTTCAGGTCGGTTTGGAAAAGTCTATAAGGGAGTCCTCCAAGACAATACAAGAATAGCAGTGAAAGTACTAAACTCTTCAACTGCTGATGATATTTCAGGGAGCTTTAAAAGGGAATGTCAGATCCTAAACAAGAGTAGGCACAGAAACTTGATGAGGATCATCAAAGTTTGCAGCAAGCCAGAGTTCAAGGCTCTTGTTCTTCCACTAATGCCAAACGGTAGCCTCGAGAGGCATCTATATCCAAGCAGTGGTTTGAGCCAGAGGTTGGATTTGGTTCAGTTAGTGAGGATCTGCAGTGATGTAGCTGAGGGAATGGCCTATCTCCACCATTACTCTCCAGTTAAAGTGGTTCATTGTGATCTTAAGCCAAGTAATATACTTCTTGATGATGATATGACTGCTCTGGTGACAGATTTTGGAATTGCAAGGCTTGTTAAATGTCATGAAAGCAACCCCTCCAATAACTCAACATCTTTCAGTTCAACACAAGGCTTGCTAGTGGGCTCTATTGGCTACATAGCGCCTGAGTATGGAATGGGAAAACATGCCTCAACTGAAGGTGATGTCTACAGTGTTGGAGTAATTCTGCTGGAAATTGTAACAAGCAGGCCCCCCACAGATGTCCTTATCCATGAAGGTTCAAGCTTGCACGAATGGGTTAAGAGACAGTATCCACACAAGCTTGAAGCCATTGTGAAACAAGCATTGGAAAGGTATTTCCCTTTAAGCCTCCCTCCATTGCAACATAAGAGAATCTGGCAAGATGTTATCATGGAACTCATAGAGCTGGGCCTTATTTGCACACAGAACAATCCTGCAATGAGACCAAGCATGTTGGATGTAGCTCTAGAACTTGGGAGGTTGAAAGACTACTTGTCTAATCCATCACTTCATATGATTGAAGAAGTCAATTGCAAGGATGATATACTTTCAACTGTTTCAACTGTGAATATTACATAA 2946 0.4046 MFLIFCLIVFRFGGVYGGEENAHKVNDESSLRSFMSGIVSDPENSLATWRSSGVPFCNWSGIVCNNVSGKVTEIHLGRRSLGGTISPAIGNLSDLKILVLSENFFRGNIPRELGSLIQLEKLSLYWNLLEGKIPSELGSLQNLHHLDIGSNRLGGVIPASLFCNLSSSLTNLDLSNNSLVGQIPLNNECVLHELKHLLVWSNHFVGQVPLALSNFTKLEWLDLGSNRFSGELPSEIVGNWPYIQYLYLSSNGFVAHNNNTNLEPFFASLVNLSNLQNLELDGNYLGGKLPHIIGDLPTSLMQLHLEGNLIHGSIPSDIAKLFNLTLLNLSNNQLNGSIPPNLSLMSKLERVFLSNNSLSGEIPSTLGQIPHLGLLDLTRNKLSGSIPDNFSNLSQLRRLLLYDNQLSGTIPLSLGKCVNLDILDLSHNKISGVIPSEVAALSNLKLYLNLSNNKLDGPLPLELSKMDMVLAIDLSMNNLSGRIPPQFESCIALEYLNLSGNSLEGPLPYSLSQLLSIQTLDVSLNRLTGEIPQSLQLSSTLKELNFSFNKFSGSVSIEGAFSSLTTDSFLGNDGLCGSVKGLPSCHKKHSNHLIILLILVLLFGTSMFYMFRLNTGVRKRLAIASMGNLKREEERKELNYPRISHKQLIEATGGFNASNLIGSGRFGKVYKGVLQDNTRIAVKVLNSSTADDISGSFKRECQILNKSRHRNLMRIIKVCSKPEFKALVLPLMPNGSLERHLYPSSGLSQRLDLVQLVRICSDVAEGMAYLHHYSPVKVVHCDLKPSNILLDDDMTALVTDFGIARLVKCHESNPSNNSTSFSSTQGLLVGSIGYIAPEYGMGKHASTEGDVYSVGVILLEIVTSRPPTDVLIHEGSSLHEWVKRQYPHKLEAIVKQALERYFPLSLPPLQHKRIWQDVIMELIELGLICTQNNPAMRPSMLDVALELGRLKDYLSNPSLHMIEEVNCKDDILSTVSTVNIT 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01058 981 CDD STKc_IRAK 661 950 - -
Accr12g01058 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Accr12g01058 981 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Accr12g01058 981 SUPERFAMILY L domain-like 257 359 - -
Accr12g01058 981 Pfam Leucine Rich Repeat 493 513 IPR001611 GO:0005515
Accr12g01058 981 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Accr12g01058 981 FunFam Leucine-rich repeat family protein 26 188 - -
Accr12g01058 981 FunFam Leucine-rich repeat receptor-like protein kinase TDR 269 587 - -
Accr12g01058 981 Gene3D Phosphorylase Kinase; domain 1 627 730 - -
Accr12g01058 981 SUPERFAMILY Protein kinase-like (PK-like) 638 945 IPR011009 -
Accr12g01058 981 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 732 959 - -
Accr12g01058 981 ProSiteProfiles Leucine-rich repeat profile. 323 345 IPR001611 GO:0005515
Accr12g01058 981 Pfam Leucine rich repeat 347 406 IPR001611 GO:0005515
Accr12g01058 981 ProSitePatterns Protein kinases ATP-binding region signature. 661 683 IPR017441 GO:0005524
Accr12g01058 981 SUPERFAMILY L domain-like 327 577 - -
Accr12g01058 981 SMART LRR_typ_2 140 164 IPR003591 -
Accr12g01058 981 SMART LRR_typ_2 92 116 IPR003591 -
Accr12g01058 981 SMART LRR_typ_2 321 345 IPR003591 -
Accr12g01058 981 SMART LRR_typ_2 215 239 IPR003591 -
Accr12g01058 981 SMART LRR_typ_2 369 392 IPR003591 -
Accr12g01058 981 SMART LRR_typ_2 393 417 IPR003591 -
Accr12g01058 981 SMART LRR_typ_2 272 296 IPR003591 -
Accr12g01058 981 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
Accr12g01058 981 ProSiteProfiles Leucine-rich repeat profile. 419 440 IPR001611 GO:0005515
Accr12g01058 981 PANTHER LEUCINE RICH REPEAT KINASE 2 264 951 - -
Accr12g01058 981 Pfam Protein kinase domain 657 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01058 981 SMART serkin_6 655 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01058 981 SUPERFAMILY L domain-like 31 254 - -
Accr12g01058 981 Gene3D Ribonuclease Inhibitor 188 589 IPR032675 -
Accr12g01058 981 ProSiteProfiles Protein kinase domain profile. 655 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01058 981 Gene3D Transferase(Phosphotransferase) domain 1 732 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01058 Accr-Chr12 11157821 11161516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01058 27 952 Receptor kinase-like Gene Family AT3G47570 34.690 1.01e-160 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Accr12g01058 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01058 - - qsa:O6P43_022222 1289.25