Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01040 ATGGTAGTTGGAATCAATAAAGAGTGTATCTTGTTTCTGTGGTTACTACTGTTCTTGGCTTCTTGTTGTTCATCATGGTCTGCGGAGGAACATCGAATAAAGCAGTTGCCGGGGCAGCCACCAGTGGGCTTCACTCAGTTCTCCGGCTACGTGACGGTGAACCGCCGGCATGGGCGAGCTTTGTTCTACTGGTTCACTCAGGCCACCTCTTCCCCTCACAATAAGCCTCTTGTTCTCTGGCTCAATGGAGGGCCTGGTTGTTCATCTGTAGCATACGGGGCATCAGAAGAAATTGGTCCATTTCGGATAAACAAAACTGGTTCTTCTCTATATCTTAACAAGTATGCATGGAACAGAGAAGCAAATATCCTTTTTCTTGAATCGCCCGCTGGTGTTGGTTTCTCCTACACAAATACAAGCTCCGACCTCAAAACTACAGGGGACAAAAGGACAGCTCAAGATGCACTGATTTTTCTAATTAGATGGATGTCAATGTTTCCACACTATAAATACAGAGAGTTTTACATTGCTGGAGAGAGCTATGCAGGGCATTACATTCCCCAGTTGGCTAAGCAAATCTATGATTATAATAAAGCACACCCACATATCATTAATCTAAAAGGGTTCATTGTGGGAAATGCTTTAACTGATGACTACTATGATGGGATTGGAACTATCACATATTGGTGGAGCCATGCTTTGATATCTGATCTCTCATACCATTCAATCCTCAAATACTGCAATTTCACATCAGAAAAGACTTCCAAAAAATGTGATGATGCAGTGAGTTATGCGGTTAACCATGAATTTGGAAAAATCGATACATACAGTATTTATACGCCGCCATGCCCAACTTGGCATAACGATACCTTAAGATATATACGGTTCAAGAATACAATGTTACATAGGATTTCGGGGTATGATCCATGCACTGAACATCGTGCAGAAAAATATTATAACCGACCCGAAGTGCAGCAAGCCATGCATGCAAATATTACAAGCATACCTTATAAGTGGACTGCTTGCAGTAATGTGCTCCTTAGAAACTGGAAGGATTCTCCAGTTTCTGTATTGCCAATATACGAAGAGTTGATTGCGGCTGGTTTAAGAATATGGGTTTTCAGCGGGGACACAGATTCTGTGGTTCCAGTAACAGCCACCAGGTTTTCGCTCAACCATCTCAACCTCACCATTAAAATTCGTTGGTATCCATGGTACTCAGGTGGACAGGTAGGCGGATGGACAGAGGTGTATGAAGGGCTCACATTTGCCACAGTGAGAGGAGCTGGGCATGAAGTACCATTATTTCAGCCTAGGCGAGCATCCACACTCTTCAAATCTTTCTTAGCAGGCAAGGAGCTACCAAAATCTTTAAAGGCTAAAAATTTGTAA 1392 0.4282 MVVGINKECILFLWLLLFLASCCSSWSAEEHRIKQLPGQPPVGFTQFSGYVTVNRRHGRALFYWFTQATSSPHNKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNKYAWNREANILFLESPAGVGFSYTNTSSDLKTTGDKRTAQDALIFLIRWMSMFPHYKYREFYIAGESYAGHYIPQLAKQIYDYNKAHPHIINLKGFIVGNALTDDYYDGIGTITYWWSHALISDLSYHSILKYCNFTSEKTSKKCDDAVSYAVNHEFGKIDTYSIYTPPCPTWHNDTLRYIRFKNTMLHRISGYDPCTEHRAEKYYNRPEVQQAMHANITSIPYKWTACSNVLLRNWKDSPVSVLPIYEELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLTIKIRWYPWYSGGQVGGWTEVYEGLTFATVRGAGHEVPLFQPRRASTLFKSFLAGKELPKSLKAKNL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01040 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 421 438 IPR033124 GO:0004185
Accr12g01040 463 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
Accr12g01040 463 FunFam Carboxypeptidase 357 451 - -
Accr12g01040 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Accr12g01040 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 421 434 IPR001563 GO:0004185|GO:0006508
Accr12g01040 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Accr12g01040 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Accr12g01040 463 FunFam Carboxypeptidase 306 454 - -
Accr12g01040 463 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Accr12g01040 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 438 IPR001563 GO:0004185|GO:0006508
Accr12g01040 463 FunFam Carboxypeptidase 27 285 - -
Accr12g01040 463 Gene3D - 310 347 - -
Accr12g01040 463 Pfam Serine carboxypeptidase 38 450 IPR001563 GO:0004185|GO:0006508
Accr12g01040 463 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Accr12g01040 463 Gene3D - 357 451 - -
Accr12g01040 463 SUPERFAMILY alpha/beta-Hydrolases 29 454 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01040 Accr-Chr12 10972623 10979177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01040 315 454 Calmodulin-binding Proteins AT2G22960 29.787 7.17e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01040 K16297 - gmx:100785391 760.755