Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01027 ATGTTTAAGGAACAGTTGGAGGTAATTGACCTTAGCAGGAACCAGTTTGAGGGTCAGATTTCTCAGGTAAATCTCAACTACAGTTTGTCTCATTTGGTTTATCTGGATTTATCTGAGAATAGGCTTAGCGGGGAAATTTTCCAGTATCTGAATGCAGCCCAGAATATTAAACACCTTAATGTGGCACACAATAGGTTTGCAAGTCAGAAATTTCCGAAAATTGAAAGCCTCTCAAGATTGGAATATCTGAACTTGTCCAAAGCTAATCTGCATGGCCACATTCCTGCTGAAATATCAAAGCTGAGTAATTTGAGTTCACTTGATATTTCTCTGAATAATCTTATTGGGGAAATTCCATTTCTAAGAAGTGAAAACCTCCAAATTCTTGACCTTTCTTACAACAATTTGAGTGGAGAAATCCCTCAAACTGTGTTGGAGAAACTCCCATCAATGGAGAAATATAACTTCTCTTATAATAACTTAACCTTCTGTTCTTTGGGAATCAACCCCAACATCCTGCAAACAGCATTCTATGGATCATCAGACAATTGCCCAATTGCTGCGAATCCGAAGCTTTTCAAAAGAACCAAAGAACGCAAGGGGATGGAGCTAGCTCTGGTATTGACCCTCTCAATGGTCTGCTTACTTTCTGGCCTTATATTTCTAGCATTTGGTTGCAGAAGGAAAACAAAATCATGGGCAATGAAGCAAACATCCTACAAAGAAGAGCAGAACATTTCGGGTCCCTTCTCGTTCCAGACTGATTCAACTACCTGGGTTGCTGATGTCAAGCAAGCAAACTCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGCTCAACATTACATTTGCAGATCTCTTGTACTCAACTTCAAATTTTGATAGAGGTACCCTCTTAGCTGAAGGTAAATTCGGGCCTGTTTACCGAGGTTTTCTGCCTAGTGGCATTCAAGTGGCAGTTAAAGTTTTGGTTGTTGGGTCTACATTGACAGATCGAGAAGCTGCTAAAGAGCTCGAGTATCTTGGTCGAATAAAGCACCCGAATCTTGTTCCTTTAACTGGGTATTGCTTTGCTGGTGATCAAAGAATTGCCATTTATGATTACATGGAGAATGGGAACTTGCAAAACTTTCTTCATGACTTGCCACTTGGGGTACAGAGGACAGATGATTGGAGCACAGACACATGGGAAGAAGGAGATGACATGAATGGAATTCAAAATGCTAGCTCTGAAGGATTATTATCACTCTCATCTTGGCGATTAAGACACAAAATCGCCCTTGGAACTGCTCGAGCATTGGCATTTCTTCACCATGGCTGCTCGCCTCCAATCATCCACAGAGATGTTAAAGCTAGCAGTGTCTACTTGGACTATAACTTGGAGCCAAGGTTATCCGATTTTGGGCTGGCCAAGATTTTTGGAAGCAGCTTGGATGAGGAGATTGCTCGAAGCTCACCCGGCTATGTTCCACCCGAGTTGTGTCAACCAGAATGTGACATCCCAACGCCAAAATCTGATGTCTACTGTTATGGGGTTGTGCTCTTTGAACTAATAACAGGAAAAAAGCCAGTTGGGGATGATTATCCTGAAGAGACAGAAGGGACTTTGGTGAGTTGGGTGAGAGCGTTGGTAAGAAAGAACCTAGCTTCAAGAGCTATTGATCCAAAAATTAGTGATAGAGGAATTGATGATCTAATTGAAGAAGCACTTAAGATTGGTTATCTTTGTACTGCTGATCTTCCTTCTAAGCGACCTAGCATGCAGCAGATAGTGGGACTTTTGAAAGATATTGAGCCTCCAGCTGCTGGGGAAAAATCGTAG 1821 0.4174 MFKEQLEVIDLSRNQFEGQISQVNLNYSLSHLVYLDLSENRLSGEIFQYLNAAQNIKHLNVAHNRFASQKFPKIESLSRLEYLNLSKANLHGHIPAEISKLSNLSSLDISLNNLIGEIPFLRSENLQILDLSYNNLSGEIPQTVLEKLPSMEKYNFSYNNLTFCSLGINPNILQTAFYGSSDNCPIAANPKLFKRTKERKGMELALVLTLSMVCLLSGLIFLAFGCRRKTKSWAMKQTSYKEEQNISGPFSFQTDSTTWVADVKQANSVPVVIFEKPLLNITFADLLYSTSNFDRGTLLAEGKFGPVYRGFLPSGIQVAVKVLVVGSTLTDREAAKELEYLGRIKHPNLVPLTGYCFAGDQRIAIYDYMENGNLQNFLHDLPLGVQRTDDWSTDTWEEGDDMNGIQNASSEGLLSLSSWRLRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSSLDEEIARSSPGYVPPELCQPECDIPTPKSDVYCYGVVLFELITGKKPVGDDYPEETEGTLVSWVRALVRKNLASRAIDPKISDRGIDDLIEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPPAAGEKS 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01027 606 Pfam Leucine Rich repeat 29 45 IPR001611 GO:0005515
Accr12g01027 606 Pfam Leucine Rich repeat 124 139 IPR001611 GO:0005515
Accr12g01027 606 Gene3D Phosphorylase Kinase; domain 1 253 368 - -
Accr12g01027 606 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 71 163 - -
Accr12g01027 606 SMART serkin_6 293 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01027 606 PRINTS Leucine-rich repeat signature 32 45 - -
Accr12g01027 606 PRINTS Leucine-rich repeat signature 101 114 - -
Accr12g01027 606 SUPERFAMILY Protein kinase-like (PK-like) 269 594 IPR011009 -
Accr12g01027 606 Gene3D Ribonuclease Inhibitor 2 174 IPR032675 -
Accr12g01027 606 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 164 - -
Accr12g01027 606 ProSiteProfiles Protein kinase domain profile. 293 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01027 606 Gene3D Transferase(Phosphotransferase) domain 1 369 603 - -
Accr12g01027 606 Pfam Protein tyrosine and serine/threonine kinase 297 592 IPR001245 GO:0004672|GO:0006468
Accr12g01027 606 SUPERFAMILY L domain-like 5 175 - -
Accr12g01027 606 FunFam Putative LRR receptor-like serine/threonine-protein kinase 254 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01027 Accr-Chr12 10826712 10828532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01027 9 597 Receptor kinase-like Gene Family AT5G07280 32.745 2.90e-88 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Accr12g01027 PK_Tyr_Ser-Thr 1.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01027 - - gmx:100807051 945.266