Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01026 ATGGGTTTTGGGGCATTTGTTTCCATTATAGTTCTGACATTTTTCTTTGAGCATTTGGCTTGCCAGCAACCAAATACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAACATGAGTTCTGCATCATCATCTTCCTCACAAGCCTTCAATCTCTCTGCTTCTGTTTGTTCATGGCCAGGTGTTTCCTGTGATGCAAGTAAAGAACATGTTGTTGAGTTGATAGCTTCTGGTTTGGGACTTTCTGGGCCTATTCCTGATAACACCATTGGCAAGCTCAACAAGCTACAAATTTTGGATCTTAGTAACAACACAATCACTGCTTTGCCGTCTGATTTCTGGAGCTTAGGCTCTTTGAAGGTTCTTAACCTCTCCTCCAATCAGATTTCAGGTTCACTTGCCAGCAACTTTGGCAACTTTGGTCTCCTTGAAGCCTTTGACTTGTCCAGCAACCATTTTTCTGGGGAAATTCCTGAAACTATTAGCTCCCTTGTTAGTTTAAAGCTCCTCAAACTTGACAAAAACAAATTTGAGCACAACATACCTTCTGGGATTCTACAGTGTCAGTCTCTAGTTTCTATTGATCTTTCACTAAATCAGCTTAATGGTACTCTTCCTCAAGGTTTTGGAGCTGCTTTTCGAAAACTTGAAAGCTTGAACCTTGCTGGGAATAATCTTCATGGTCATGATTCAGATTTTTCAGGATTGAGATCCATTACTAGTGTCAACATATCTTCAAATTCCTTTCAGGGTTCTTTTTTGGGTATGTTTAAGGAACAGTTGGAGGTAATTGACCTTAGCAGGAACCAGTTTGAGGGTCAGATTTCTCAGGTAAATCTCAACTACAGTTTGTCTCATTTGGTTTATCTGGATTTATCTGAGAATAGGCTTAGCGGGGAAATTTTCCAGTATCTGAATGCAGCCCAGAATATTAAACACCTTAATGTGGCACACAATAGGTTTGCAAGTCAGAAATTTCCGAAAATTGAAAGCCTCTCAAGATTGGAATATCTGAACTTGTCCAAAGCTAATCTGCATGGCCACATTCCTGCTGAAATATCAAAGCTGAGTAATTTGAGTTCACTTGATATTTCTCTGAATAATCTTATTGGGGAAATTCCATTTCTAAGAAGTGAAAACCTCCAAATTCTTGACCTTTCTTACAACAATTTGAGTGGAGAAATCCCTCAAACTGTGTTGGAGAAACTCCCATCAATGGAGAAATATAACTTCTCTTATAATAACTTAACCTTCTGTTCTTTGGGAATCAACCCCAACATCCTGCAAACAGCATTCTATGGATCATCAGACAATTGCCCAATTGCTGCGAATCCGAAGCTTTTCAAAAGAACCAAAGAACGCAAGGGGATGGAGCTAGCTCTGGTATTGACCCTCTCAATGGTCTGCTTACTTTCTGGCCTTATATTTCTAGCATTTGGTTGCAGAAGGAAAACAAAATCATGGGCAATGAAGCAAACATCCTACAAAGAAGAGCAGAACATTTCGGGTCCCTTCTCGTTCCAGACTGATTCAACTACCTGGGTTGCTGATGTCAAGCAAGCAAACTCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGCTCAACATTACATTTGCAGATCTCTTGTACTCAACTTCAAATTTTGATAGAGGTACCCTCTTAGCTGAAGGTAAATTCGGGCCTGTTTACCGAGGTTTTCTGCCTAGTGGCATTCAAGTGGCAGTTAAAGTTTTGGTTGTTGGGTCTACATTGACAGATCGAGAAGCTGCTAAAGAGCTCGAGTATCTTGGTCGAATAAAGCACCCGAATCTTGTTCCTTTAACTGGGTATTGCTTTGCTGGTGATCAAAGAATTGCCATTTATGATTACATGGAGAATGGGAACTTGCAAAACTTTCTTCATGACTTGCCACTTGGGGTACAGAGGACAGATGATTGGAGCACAGACACATGGGAAGAAGGAGATGACATGAATGGAATTCAAAATGCTAGCTCTGAAGGATTATTATCACTCTCATCTTGGCGATTAAGACACAAAATCGCCCTTGGAACTGCTCGAGCATTGGCATTTCTTCACCATGGCTGCTCGCCTCCAATCATCCACAGAGATGTTAAAGCTAGCAGTGTCTACTTGGACTATAACTTGGAGCCAAGGTTATCCGATTTTGGGCTGGCCAAGATTTTTGGAAGCAGCTTGGATGAGGAGATTGCTCGAAGCTCACCCGGCTATGTTCCACCCGAGTTGTGTCAACCAGAATGTGACATCCCAACGCCAAAATCTGATGTCTACTGTTATGGGGTTGTGCTCTTTGAACTAATAACAGGAAAAAAGCCAGTTGGGGATGATTATCCTGAAGAGACAGAAGGGACTTTGGTGAGTTGGGTGAGAGCGTTGGTAAGAAAGAACCTAGCTTCAAGAGCTATTGATCCAAAAATTAGTGATAGAGGAATTGATGATCTAATTGAAGAAGCACTTAAGATTGGTTATCTTTGTACTGCTGATCTTCCTTCTAAGCGACCTAGCATGCAGCAGATAGTGGGACTTTTGAAAGATATTGAGCCTCCAGCTGCTGGGGAAAAATCGTAG 2583 0.4123 MGFGAFVSIIVLTFFFEHLACQQPNTDDFFVSEFLKNMSSASSSSSQAFNLSASVCSWPGVSCDASKEHVVELIASGLGLSGPIPDNTIGKLNKLQILDLSNNTITALPSDFWSLGSLKVLNLSSNQISGSLASNFGNFGLLEAFDLSSNHFSGEIPETISSLVSLKLLKLDKNKFEHNIPSGILQCQSLVSIDLSLNQLNGTLPQGFGAAFRKLESLNLAGNNLHGHDSDFSGLRSITSVNISSNSFQGSFLGMFKEQLEVIDLSRNQFEGQISQVNLNYSLSHLVYLDLSENRLSGEIFQYLNAAQNIKHLNVAHNRFASQKFPKIESLSRLEYLNLSKANLHGHIPAEISKLSNLSSLDISLNNLIGEIPFLRSENLQILDLSYNNLSGEIPQTVLEKLPSMEKYNFSYNNLTFCSLGINPNILQTAFYGSSDNCPIAANPKLFKRTKERKGMELALVLTLSMVCLLSGLIFLAFGCRRKTKSWAMKQTSYKEEQNISGPFSFQTDSTTWVADVKQANSVPVVIFEKPLLNITFADLLYSTSNFDRGTLLAEGKFGPVYRGFLPSGIQVAVKVLVVGSTLTDREAAKELEYLGRIKHPNLVPLTGYCFAGDQRIAIYDYMENGNLQNFLHDLPLGVQRTDDWSTDTWEEGDDMNGIQNASSEGLLSLSSWRLRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSSLDEEIARSSPGYVPPELCQPECDIPTPKSDVYCYGVVLFELITGKKPVGDDYPEETEGTLVSWVRALVRKNLASRAIDPKISDRGIDDLIEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPPAAGEKS 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01026 860 Gene3D Ribonuclease Inhibitor 279 376 IPR032675 -
Accr12g01026 860 SMART serkin_6 547 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01026 860 Gene3D Ribonuclease Inhibitor 377 449 IPR032675 -
Accr12g01026 860 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Accr12g01026 860 Pfam Leucine Rich repeat 283 299 IPR001611 GO:0005515
Accr12g01026 860 Pfam Leucine Rich repeat 378 393 IPR001611 GO:0005515
Accr12g01026 860 SMART LRR_typ_2 163 187 IPR003591 -
Accr12g01026 860 SMART LRR_typ_2 92 114 IPR003591 -
Accr12g01026 860 SMART LRR_typ_2 115 138 IPR003591 -
Accr12g01026 860 SMART LRR_typ_2 283 303 IPR003591 -
Accr12g01026 860 SMART LRR_typ_2 378 401 IPR003591 -
Accr12g01026 860 SMART LRR_typ_2 331 355 IPR003591 -
Accr12g01026 860 SMART LRR_typ_2 212 234 IPR003591 -
Accr12g01026 860 ProSiteProfiles Protein kinase domain profile. 547 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g01026 860 Gene3D Ribonuclease Inhibitor 182 278 IPR032675 -
Accr12g01026 860 Pfam Leucine rich repeat 84 128 IPR001611 GO:0005515
Accr12g01026 860 PRINTS Leucine-rich repeat signature 355 368 - -
Accr12g01026 860 PRINTS Leucine-rich repeat signature 286 299 - -
Accr12g01026 860 SUPERFAMILY L domain-like 41 416 - -
Accr12g01026 860 FunFam Calmodulin-binding receptor kinase CaMRLK 258 374 - -
Accr12g01026 860 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Accr12g01026 860 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Accr12g01026 860 Gene3D Transferase(Phosphotransferase) domain 1 623 857 - -
Accr12g01026 860 Pfam Protein tyrosine and serine/threonine kinase 551 846 IPR001245 GO:0004672|GO:0006468
Accr12g01026 860 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 259 417 - -
Accr12g01026 860 SUPERFAMILY Protein kinase-like (PK-like) 523 848 IPR011009 -
Accr12g01026 860 FunFam Nuclear pore complex protein NUP107 26 181 - -
Accr12g01026 860 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01026 Accr-Chr12 10825950 10828532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01026 43 851 Receptor kinase-like Gene Family AT5G07280 31.898 1.87e-110 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Accr12g01026 PK_Tyr_Ser-Thr 3.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01026 - - gmx:100797738 1286.94