Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01020 ATGGAAGAGAACATGTCAAGCAAGGCATCAAGTGGTGTGGACAATATGAGCACAGAAGGTTTCGAGTCAAATCGCGATTGTTACATGGTCTATCCAAACAAACATTTAGGACATTACAGCTGGGGTTCTCAGATATATGCTTACAGCCATCACTTTTGGCAAGGGACCGTCAAGTCTGAGGAGGAAGGTGGTTCATGCCAACCAATATTGCAAGGACTTGATGGGGATAATTATAGAAAGAGTGAATCAGGTATTTGTGGTCTTAACCTTTCGGAAATGCAGAAAAGAGGTGACTTCTCACGCAAGCTACTATTCAAAAAGATGCTGACACCGAGCGATGTGGGTAGGTTGAACAGAATTGTCATCCCCAAGAAGAACGCCACCACGTGTTTCCCTGAAATATCTAGAAGAATGGAAGAAGATGCAAAAGCAGGCGTGCGAGGCGAGGTGCAAGTGGATTTCTTCGACCGGACTATGAGGGCTTGGAAGTTTCGGTACTGCTATTGGAAGAGCAGCCAGAGTTATGTGTTCACTAGGGGTTGGGGCAGGTTTGTGAAAGACAAGAACTTGAAGGTTAATGATGTTGTAGCCTTTTACATGTGTGAAGTACAAAGGGAAGGGAAATTAGTGAACAAGTTCTTGATGATTGACCCTGATGTGAGAGTAGGTGAAGAAGATTCTGGTGGAAGTAGCAGCAGAAGCTCAGTGATTGAAGTTGATGATGATCACATTAATGTTGAGTTGACTCAGCCTGATGATGTTGAGATCAAGAGGCTTGGAAAGCGAGTGATGGATTCTGAATCACCAACAAGTGTTAAGAGGAAAGGTTTTAGACTCTTTGGGGTTCAAATCAACTGA 858 0.4371 MEENMSSKASSGVDNMSTEGFESNRDCYMVYPNKHLGHYSWGSQIYAYSHHFWQGTVKSEEEGGSCQPILQGLDGDNYRKSESGICGLNLSEMQKRGDFSRKLLFKKMLTPSDVGRLNRIVIPKKNATTCFPEISRRMEEDAKAGVRGEVQVDFFDRTMRAWKFRYCYWKSSQSYVFTRGWGRFVKDKNLKVNDVVAFYMCEVQREGKLVNKFLMIDPDVRVGEEDSGGSSSRSSVIEVDDDHINVELTQPDDVEIKRLGKRVMDSESPTSVKRKGFRLFGVQIN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01020 285 ProSiteProfiles B3 DNA-binding domain profile. 105 219 IPR003340 GO:0003677
Accr12g01020 285 Pfam B3 DNA binding domain 105 210 IPR003340 GO:0003677
Accr12g01020 285 SUPERFAMILY DNA-binding pseudobarrel domain 101 202 IPR015300 -
Accr12g01020 285 Gene3D - 99 217 IPR015300 -
Accr12g01020 285 CDD B3_DNA 104 210 IPR003340 GO:0003677
Accr12g01020 285 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 40 284 IPR044800 GO:0003700
Accr12g01020 285 SMART B3_2 105 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01020 Accr-Chr12 10751479 10752336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01020 37 284 RAV Transcription Factor Family AT1G50680 35.599 5.33e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr12g01020 B3 4e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01020 K09287 - cave:132185862 181.03