Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01019 ATGCAGCCGAATAGCAGCGAAATGCGACACTCAATCAACTCTTCTTCCTCTAATATCTCCCCCATGAACTCTTCCCAAATTCCTCTTAACGACCAGATCCAACAACAACCTGACCTCCATGACGATTTTCTCGACCAAATGTTCTCTAACCTTCCTTCCTTCTGGGACCAAACACTCAATCCCTCCGACGACAGCCACAATCAAAACAATGGCGCCGCTTTCCATTACGACGACAAGTCGTTTCGCAACCACCACCAGATCCCTCCCGCCTCCACTGCTCCACCGCCTCCTCCTCCTCCTAAGTCCGCCGCCGCTGAGGCTGTCGCTTTGATGCTTCAGCGCCAGCTTCTCATGTCCAGAGGTGTTTCAGCCGACTCTGCCCTTCTTCAGATGCCCCTCTCTCTCGGCGCCACTGGAGGAAACTTCGAGCCTTCCCGCAACGACGTTGTTGATGGTTCCTCCTTCAAATCTCACATTCCGGCCGGCGACGGTACCGTCCAATCACTGTACAACGGGCTTGCCGGATCTATGCACGACGAGCATCAACCTTCCAACCAAACTCAACATTTCCATCATCCTCAGAATTATGGAGCAACAGGGCCGCCGGCGACGAACCAAGCCCCACAGAACGGAGCTCCGGCTCAACCGAAACAGAGGATTAGGGCGAGGCGGGGTCAGGCGACGGACCCACACAGCATCGCTGAGAGGTTACGAAGGGAGAGAATCGCAGAGAGAATGAAGGCTCTGCAGGAACTGGTTCCCAATGGCAACAAGACGGACAAGGCGTCAATGCTGGACGAGATCATAGACTATGTCAAGTTCTTACAGCTCCAAGTGAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCTGCTGCTGTTGCTCCTCTTGTTGCTGATATCTCCTCTGAGGGAGGAGGTGACTGCATTCAAACTGCCGCCGTTCGCACCTCTAACGGCAACCAAACGGCGTCGTCCACCAACGACACCCTCGCCATGACGGAGCACCAGGTGGCCAAGCTCATGGACGAAGACATGGGCTCCGCCATGCAGTACCTTCAGGGGAAAGGTCTCTGCCTCATGCCCATCTCCCTAGCCACCGCCATATCCACTGCTACGTGTCCCTCCAGGAACCCCCTGATCCCCGCCGCTGCCGACAACAACCACCACCATCCAGCCGCGGCGTCCAACGGAAACGTAGGGGAAGGTCCGTCTTCTCCCAGCATGTCGGTGCTGACCGTGCAGTCAGCCACGGCGGTTAACGACGGCGCCGTTAAAGACGCGGCCTCCGTTTCGAAGCCGTGA 1302 0.5661 MQPNSSEMRHSINSSSSNISPMNSSQIPLNDQIQQQPDLHDDFLDQMFSNLPSFWDQTLNPSDDSHNQNNGAAFHYDDKSFRNHHQIPPASTAPPPPPPPKSAAAEAVALMLQRQLLMSRGVSADSALLQMPLSLGATGGNFEPSRNDVVDGSSFKSHIPAGDGTVQSLYNGLAGSMHDEHQPSNQTQHFHHPQNYGATGPPATNQAPQNGAPAQPKQRIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGGDCIQTAAVRTSNGNQTASSTNDTLAMTEHQVAKLMDEDMGSAMQYLQGKGLCLMPISLATAISTATCPSRNPLIPAAADNNHHHPAAASNGNVGEGPSSPSMSVLTVQSATAVNDGAVKDAASVSKP 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01019 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 275 IPR011598 GO:0046983
Accr12g01019 433 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 368 - -
Accr12g01019 433 Gene3D - 221 283 IPR036638 GO:0046983
Accr12g01019 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 286 IPR036638 GO:0046983
Accr12g01019 433 MobiDBLite consensus disorder prediction 89 103 - -
Accr12g01019 433 MobiDBLite consensus disorder prediction 1 39 - -
Accr12g01019 433 MobiDBLite consensus disorder prediction 1 41 - -
Accr12g01019 433 FunFam Transcription factor bHLH66 223 288 - -
Accr12g01019 433 Pfam Helix-loop-helix DNA-binding domain 231 276 IPR011598 GO:0046983
Accr12g01019 433 SMART finulus 232 281 IPR011598 GO:0046983
Accr12g01019 433 MobiDBLite consensus disorder prediction 55 103 - -
Accr12g01019 433 MobiDBLite consensus disorder prediction 178 213 - -
Accr12g01019 433 MobiDBLite consensus disorder prediction 55 74 - -
Accr12g01019 433 MobiDBLite consensus disorder prediction 175 230 - -
Accr12g01019 433 MobiDBLite consensus disorder prediction 381 414 - -
Accr12g01019 433 MobiDBLite consensus disorder prediction 398 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01019 Accr-Chr12 10724459 10727680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01019 212 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 65.546 7.14e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g01019 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01019 - - cave:132185902 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g01019 12 10724459 10727680 Accr12g01019 12 10724459 10727680 ECH