Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01001 ATGACTATGGAGGACCAAAGGTGTGATTTGGTTGATGAAAATGGGACCACAAAAAAGTTTCCTGTTGGTATGAGTGTTCTGGCGGTTGACGACGACCCAATTTGTCTCAAAGTGTTGGAGACTTTGCTTGTCAAATGCGAGTACCAGGTTACTACAACTAATCAGGCCGTTAAGGCTTTGAAAATGCTAAGGGAAAACAGGAACAAGTTTGACCTCGTCATTAGTGATGTAAATATGCCAGACATAGATGGATTTAAGCTCCTTGAGCTAGTAGGACTTGAAATGGACCTACCAGTCATCATGTTGTCAGCACACAGTGATACAAGGCTTGTGATGAAGGGTGTTACCCATGGTGCATGTGACTATTTACTGAAACCTGTTAGAATGGAAGAGCTTAAGAACATATGGCAACATGTGGTTCGAAGAAAGAAGTTTGATAATAAGGATCAGAATAAGGCTTCTAAGTTGGAGAAGGCGAACAATATGGCTGGGGGAGGGGGTCAAGGCATCAGTTCTGAAAATAATTTGGATCAGAGGAAAATGCTGGGTAAAAGGAGGAAGGACCAAAGCGAGGATGAGGAAGAAGATGATGAGGACAATGCTCAACAGAATGAGGAGGACCCATCAACACAGAAGAGGCCGCGTGTAGTTTGGTCAGTTGAGCTGCACAGAAAATTTGTTGCTGCAGTCGATCAACTGGGACTTGAAAAGGCGGTTCCCAAGAAAATTCTTGACCTGATGAATGTTGAAGGGCTAACAAGGGAAAATGTGGCAAGCCATCTACAGAAATATAGGATCTATCTTAAAAAGGTAACTCTACACGCTAAAATTGCTGCTGCATTGGGTGGCGAATCATCATACTTGCCGATGGGCTCTTCAGAGGGATATGGAGAGTTTCGGACGTTATCTGGTTCACCACGGCTCTCATCAACATTTCCATCTGCTGGAATTTTTAGCAGACTGAACTCTCCATCTGGCTTGAACATGAGAGGAATCAGTTCTTCTGGGCTGATCCAGCCCAGTCAGTCTCAAAACTCCAGCATAGCCTCAAACGTTGGAAATCTTCAGATATCATCTATCTTGTCTGCAAACTCAAGTTTATTTCAAAACATTCCAACGCCAATAGAGCTTAGTCAATCTCAACCAAGCAACTGTGCCACTGGTATTAGGCAGTTTAGTTCAATTGACGATTCAAGTGGTTTTGTAGTTGACAGTGTATTCCTAGAGTGTAAAGCCACTGTTGGTGGTGCAAACAATTCTTGTGTCACAAGTAAGCCTTTGATGTTACCAGGAAGCTCACGGCAATCTCAAAACCTGGGAGGATTTAGAAATCAATCTTCTTTTGGAGCTGCTCCTTTGAACTCAGAAACTTTAGCTATTTGTGGTTCCAATTTCTTGGACTATACACAATGCAATGAAAGCTGGCAGGGCGCAGTTCAGTTGTCTAAATTTCCCTCTAATTCTTTGCCATTAAAAGAGACTTTCACTGATGATCAGCTACCTTCTAATGTCTTAAATGTTTCTTCCTCCAATACTTACATCAGTAACAACCCAGTTGATTTTTCTTCTGCTGTTCCACTGGAGGATCCTAAAGGTGAACTACAATGTCAAGAAGGCCTAATTGGGAATGTGGTTCAGTCTTCGAGTTACACGATGGGGCAGAGCTGGGAACTACATAAGCAGGATTACAACCAAAACATGAGCTGCAATTTCAATGCTGTGAATTCACTATTTTCTTCTAATGGAATCATAAGTACCATGGATCAGAGTTTAAATCAAAATAATTCAACATGCAGCAAGAGGGTTGACGCATCTTTCATGGACCAATTCAATGGGGCTACTCCATCAACCTCTCAATTTAATGAGGATGAGAGGTTCCCTTCAGATATGAGATTCAAATCTACTGATGCATACCAGGATGGTTTCATTGGAAATATTGGATACCTGGATGACATAATGGGTTCAATGGTTAAACGGGAGCAACATGAGATGATGATGATGGATGGAGAGGCCCGATACGATGCCTTCCCGATTGGATCTTGTAACTGA 2049 0.4222 MTMEDQRCDLVDENGTTKKFPVGMSVLAVDDDPICLKVLETLLVKCEYQVTTTNQAVKALKMLRENRNKFDLVISDVNMPDIDGFKLLELVGLEMDLPVIMLSAHSDTRLVMKGVTHGACDYLLKPVRMEELKNIWQHVVRRKKFDNKDQNKASKLEKANNMAGGGGQGISSENNLDQRKMLGKRRKDQSEDEEEDDEDNAQQNEEDPSTQKRPRVVWSVELHRKFVAAVDQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRIYLKKVTLHAKIAAALGGESSYLPMGSSEGYGEFRTLSGSPRLSSTFPSAGIFSRLNSPSGLNMRGISSSGLIQPSQSQNSSIASNVGNLQISSILSANSSLFQNIPTPIELSQSQPSNCATGIRQFSSIDDSSGFVVDSVFLECKATVGGANNSCVTSKPLMLPGSSRQSQNLGGFRNQSSFGAAPLNSETLAICGSNFLDYTQCNESWQGAVQLSKFPSNSLPLKETFTDDQLPSNVLNVSSSNTYISNNPVDFSSAVPLEDPKGELQCQEGLIGNVVQSSSYTMGQSWELHKQDYNQNMSCNFNAVNSLFSSNGIISTMDQSLNQNNSTCSKRVDASFMDQFNGATPSTSQFNEDERFPSDMRFKSTDAYQDGFIGNIGYLDDIMGSMVKREQHEMMMMDGEARYDAFPIGSCN 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01001 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 369 IPR045279 GO:0009736
Accr12g01001 682 MobiDBLite consensus disorder prediction 147 213 - -
Accr12g01001 682 FunFam Two-component response regulator 209 272 - -
Accr12g01001 682 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Accr12g01001 682 SUPERFAMILY CheY-like 23 150 IPR011006 -
Accr12g01001 682 Coils Coil 187 207 - -
Accr12g01001 682 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Accr12g01001 682 Gene3D - 209 272 - -
Accr12g01001 682 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 266 IPR006447 GO:0003677
Accr12g01001 682 Gene3D - 24 161 - -
Accr12g01001 682 CDD REC_typeB_ARR-like 26 140 - -
Accr12g01001 682 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Accr12g01001 682 SMART REC_2 24 136 IPR001789 GO:0000160
Accr12g01001 682 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Accr12g01001 682 PIRSF RR_ARR_type-B 1 677 IPR017053 GO:0003677|GO:0003700|GO:0009736
Accr12g01001 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 269 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01001 Accr-Chr12 10530048 10533304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g01001 19 384 Response Regulator Gene Family AT2G25180 53.684 6.31e-118 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Accr12g01001 Response_reg 7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01001 K14491 - gmx:100776075 839.336