Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr12g00990 | ATGTCGGGCTGGGACGAGGGAGCCGTCTACTATAGCGACCAAGCTCACTCCTGGGACGACCGCGGCGGAGACGCTCCCACTGCGGCCGCCGACAACCACACTATCCTCCAGAAATTAAAGGAGTTCATCCGAAACTTCGAGACCGACAAGAATGTGTTCCCTTACAGAGAAGGCCTTGTCCATAATCCCAAGTTTCTTGTTGTTGACTTGGAAGATCTTGATGCCTTCGATCCTGATCTGCCTGCCAAACTCCGCTCCAACCCGGCTGATTACCTGCCACTGTTTGAGATGGCAGCGGCCCAGGTTCTGGTGAGTTTGAAGACGAAAGTGGCAGGGGATACTGGAGTTATGGAAGAACCAGTGACTGGGGATGTGCAGATTTTGCTCACTTCCAAGGAGGATCCAGTGTCAATGAGATCCCTCGGGGCTCAATATATATCAAGGCTCGTTAAGATAGCGGGGATTACAATTGCTGCTTCGAGGACTAAGGCTAAGGCAACTTATGTCACCTTAATATGTAAGAATTGCAAAAAGGGGAAGCAAGTTCCATGTCGGCCAGGACTTGGAGGGGCGATTGTCCCTCGTTCATGTGATCATATTCCTCAGCCAGGAGAAGAACCATGCCCAATTGATCCCTGGCTTGTGGTTCCTGATAAGAGCAAGTATGTTGACCAACAAACCTTAAAACTACAAGAAAATCCCGAGGATGTTCCAACTGGGGAGCTTCCCAGAAACATACTTCTCTCTGTTGATCGTCATCTTGTTCAAACAGTGGTACCTGGCTCAAGATTGACAATCATAGGAATCTATAGTATCTATCAAGCTTCCAATTCCTCTGCAGCCCAGAAAGGAGCTGTTGCAGTTAGACAGCCTTACATTAGGGTTGTTGGAATGGAACAAGCAAATGAGGCCAGCTCTCGAGGTCCAGCTGCATTCACACAAGAGGAGATAGAAGAATTCAAAAAATTTGCTGCTGAACCTGATGCATACAAAAATATATGCGCCAAGATTGCTCCCTCCATTTTTGGTCATGATGATGTCAAAAAGGCTGTGGCCTGTCTTCTTTTTGGAGGGTCAAGAAAGAACTTGCCGGATGGTGTGAAGTTAAGAGGTGATATCAACGTATTACTTTTTGGGGATCCATCAACCGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACTGCTCCTGTTGCTGTTTATACTTCGGGAAAAGGATCATCAGCCGCAGGTCTCACAGCTTCTGTAATTCGAGATAGCAGCTCTCGAGAGTTCTATCTTGAAGGAGGAGCCATGGTCTTGGCAGATGGAGGGGTTGTTTGCATCGATGAGTTTGACAAGATGAGACCAGAGGATAGGGTTGCTATTCATGAAGCTATGGAGCAGCAAACCATATCCATTGCAAAAGCAGGAATAACAACTGTTCTTAACTCGAGAACTTCTGTGCTTGCTGCTGCCAACCCTCCATCAGGACGTTATGATGATCTCAAGACAGCACAGGATAACATTGATCTGCAAACAACCATTCTTTCTAGGTTCGATTTAATCTTCATTGTGAAAGACATCAGAATGTATAGTCAAGACAAGGTCATAGCTAGTCATATCATTAAGGTTCATGCATCAGCTAATACAACTACTGGTGAGAGTAGGGTTTCAAAAGAAGAGAACTGGCTCAAGAGGTATTTGCAATATTGCCGAACTGAATGTCACCCTCGTCTGTCAGAATCTGCAGCAACATTACTACAGAACAATTATGTCAAAATCAGACAGGATATGAGGAGGCAGGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTTAGACTGAGTGAGGCACTTGCGAAAATGAAGCTATCTCATGTTGCCACTGAGGAGAATGTGCAAGAGGCAATAAGGCTTTTTACCGTTTCTACAATGGACGCAGCCAAGTCTGGAATAGCCCAACAAGTGAATCTTACGCCAGATATGGCAAATGAAATAAAGCAAGCCGAAATTCAGATAAAGAGAAGAATAGGGATTGGAAACCACTTATCAGAAAGAAGGTTGATTGATGATCTCGTTAGGATGGGATTGAATGACTCTATTGTGAGAAGAGCTCTAATAATCATGCACCAGAGAGATGAAATAGAGTATAAGAGAGAAAGGCGTGTTGTATTCAGGAAAGCATAA | 2196 | 0.449 | MSGWDEGAVYYSDQAHSWDDRGGDAPTAAADNHTILQKLKEFIRNFETDKNVFPYREGLVHNPKFLVVDLEDLDAFDPDLPAKLRSNPADYLPLFEMAAAQVLVSLKTKVAGDTGVMEEPVTGDVQILLTSKEDPVSMRSLGAQYISRLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNILLSVDRHLVQTVVPGSRLTIIGIYSIYQASNSSAAQKGAVAVRQPYIRVVGMEQANEASSRGPAAFTQEEIEEFKKFAAEPDAYKNICAKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLFGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKVIASHIIKVHASANTTTGESRVSKEENWLKRYLQYCRTECHPRLSESAATLLQNNYVKIRQDMRRQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVSTMDAAKSGIAQQVNLTPDMANEIKQAEIQIKRRIGIGNHLSERRLIDDLVRMGLNDSIVRRALIIMHQRDEIEYKRERRVVFRKA | 731 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr12g00990 | 731 | ProSitePatterns | MCM family signature. | 438 | 446 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Accr12g00990 | 731 | Gene3D | - | 138 | 273 | IPR012340 | - | |
| Accr12g00990 | 731 | SMART | mcm | 134 | 648 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 339 | 647 | IPR027417 | - | |
| Accr12g00990 | 731 | Pfam | MCM N-terminal domain | 38 | 108 | IPR027925 | - | |
| Accr12g00990 | 731 | Gene3D | - | 165 | 223 | - | - | |
| Accr12g00990 | 731 | FunFam | DNA helicase | 165 | 223 | - | - | |
| Accr12g00990 | 731 | Pfam | MCM AAA-lid domain | 557 | 646 | IPR041562 | - | |
| Accr12g00990 | 731 | CDD | MCM5 | 332 | 646 | - | - | |
| Accr12g00990 | 731 | Gene3D | - | 310 | 665 | IPR027417 | - | |
| Accr12g00990 | 731 | ProSiteProfiles | MCM family domain profile. | 329 | 535 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 370 | 385 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 509 | 517 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 482 | 494 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 430 | 444 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 458 | 471 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | Pfam | MCM OB domain | 138 | 273 | IPR033762 | - | |
| Accr12g00990 | 731 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 33 | 682 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | SUPERFAMILY | Nucleic acid-binding proteins | 39 | 295 | IPR012340 | - | |
| Accr12g00990 | 731 | Pfam | MCM P-loop domain | 317 | 539 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Accr12g00990 | 731 | FunFam | DNA helicase | 30 | 118 | - | - | |
| Accr12g00990 | 731 | Gene3D | - | 30 | 116 | - | - | |
| Accr12g00990 | 731 | FunFam | DNA helicase | 310 | 661 | - | - | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 139 | 154 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 565 | 580 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 641 | 658 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 289 | 301 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Accr12g00990 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 165 | 177 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr12g00990 | Accr-Chr12 | 10440201 | 10445493 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr12g00990 | 1 | 731 | Core DNA Replication Machinery Family | AT2G07690 | 78.796 | 0.0 | 1196 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr12g00990 | K02209 | - | jre:109019482 | 1297.34 |