Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00976 ATGGCTTTTCATGACCATCTACCTCAAGAACTGGCTTTTCAGCCTTTCACCGATGAGCAGCAACAGTTAAGTCAAAACAGGGACATGCAGAGGATGATGCCGTTCTCCGCCGCCGGGGGAAACCCGGCTCCGACGTGGCTGGTGAATAGCGGAGGGGGGCCGTCTCTGCGGCAGCAGAATTTCCTCCACTTGCCGTCGGACTCGTCGGCGGATGATGTTCGGGGGAGTATGATGCCGTCGTCGGAGAGGAACAACGATCGAGACGGCGGTGGCGATCGGAGCCGCGGCATCGGCGGCGGGAATTGTGAATCAGAGGATTTGGCAGAGTACAAAGCGGACATTTTGGGACATCCCCTTTACGACCAGCTCTTGTCGGCTCATGTGTCGTGTTTAAGGATTGCCACTCCGGTGGACCAGCTTCCTAGAATCGATGCCCAGCTTCAACAGGCACAGCGTGTCCTTGAAAAATACTCTGGTCTTGGTAATGGCGTTGTTGATGAGAAGGAGCTTGACCAGTTCATGACGCATTATGTTCTATTGCTATGTGCTTTCAAAGAACAACTTCAACAACATGTCCGGGTTCATGCCATGGAAGCTGTCATGGCTTGCTGGGAGCTTGAGCAGTCTCTTCAGAGCTTGACTGGAGTGTCACCAGGAGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGTAGAGAGCAATGCTAACATGTACGATGGCGGCCTTGATGCTGCTGACACCCTTGGATTTGGTCCTCTTGTTCCCACTGAAACTGAAAGATCTTTGATGGAGCGTGTCAGACATGAACTTAAGCATGAATTAAAGCAGGGTTACAAGGAGAAGATTGTAGACATACGGGAGGAAATTCTGAGAAAGAGACGTGCCGGGAAGCTGCCTGGTGACACAACCTCCCTCTTGAAAGCTTGGTGGCAATCTCATTCTAAATGGCCTTATCCTACTGAGGAAGACAAGGCAAGGTTGGCGCAGGAAACAGGGTTACAACTAAAGCAGATAAATAACTGGTTTATTAATCAAAGGAAAAGGAATTGGCATACAAATCCTTCGTCATCTACCCCCTCTAAAAGCAAGCGCAAGAGCAATGCAGGAGAAACCAGTAACCAGAGCTTCATGTGA 1143 0.5048 MAFHDHLPQELAFQPFTDEQQQLSQNRDMQRMMPFSAAGGNPAPTWLVNSGGGPSLRQQNFLHLPSDSSADDVRGSMMPSSERNNDRDGGGDRSRGIGGGNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQAQRVLEKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQVESNANMYDGGLDAADTLGFGPLVPTETERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLAQETGLQLKQINNWFINQRKRNWHTNPSSSTPSKSKRKSNAGETSNQSFM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00976 380 MobiDBLite consensus disorder prediction 51 66 - -
Accr12g00976 380 MobiDBLite consensus disorder prediction 14 31 - -
Accr12g00976 380 SMART HOX_1 294 359 IPR001356 GO:0003677
Accr12g00976 380 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 366 - -
Accr12g00976 380 SMART ELK_2 272 293 IPR005539 GO:0003677
Accr12g00976 380 Pfam KNOX1 domain 110 150 IPR005540 GO:0003677|GO:0005634
Accr12g00976 380 Pfam ELK domain 272 293 IPR005539 GO:0003677
Accr12g00976 380 ProSiteProfiles 'Homeobox' domain profile. 292 355 IPR001356 GO:0003677
Accr12g00976 380 CDD homeodomain 295 356 IPR001356 GO:0003677
Accr12g00976 380 Pfam KNOX2 domain 165 214 IPR005541 GO:0003677|GO:0005634
Accr12g00976 380 SUPERFAMILY Homeodomain-like 294 360 IPR009057 -
Accr12g00976 380 SMART KNOX2_2 159 215 IPR005541 GO:0003677|GO:0005634
Accr12g00976 380 MobiDBLite consensus disorder prediction 1 100 - -
Accr12g00976 380 MobiDBLite consensus disorder prediction 349 380 - -
Accr12g00976 380 SMART KNOX1_2 108 152 IPR005540 GO:0003677|GO:0005634
Accr12g00976 380 Pfam Homeobox KN domain 312 351 IPR008422 GO:0003677|GO:0006355
Accr12g00976 380 Gene3D - 294 372 - -
Accr12g00976 380 FunFam homeobox protein knotted-1-like 3 isoform X1 293 354 - -
Accr12g00976 380 ProSiteProfiles ELK domain profile. 272 292 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00976 Accr-Chr12 10250262 10254005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00976 1 368 Homeobox Transcription Factor Family AT5G25220 61.995 2.54e-170 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr12g00976 KNOX2 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00976 - - pcin:129320455 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00976 12 10250262 10254005 Accr12g00976 12 10250262 10254005 ECH