Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00973 ATGGCCGGGAAAATTCCCGGAGTGGAGTGTGCTCGAAGGAGAAGGTTCCATCAGAGTGGAGTATGGTCCGATTCCCCATCCTCCATGGCTCCTCATAGTTATACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAACCATGAATCTCTTTCTTCTTCCTCTTTACTGCAGCAAAGAAGCTTGGTATATCAGGCATACCCACATGAAGTGCTGGGAGGTGCAGCTAGAGAAGCCAAACAGAGATTGGATGAGAGATTAGGAACACAGAGGAAAACAGAGATCAAAAGGAAACCGAAGAGCAAAGAGAAGGTGGGGAGTGAAGCAGAGTTACAGATAGAAATATATGGAGAAAAGAAAAATAGAAGCAGGAAATTCAGTTGGAGTAAATTGAGCTGGAAGGCAACAGAACAAGAGGAATGTGCAGTGTGCTTAGAATCATTCAAAAATGGCGACACACTTATAAATCTTCCGTGTGCACACAAGTTCCATTCAAGGTGTTTGGAGCCATGGCTGCAAAATAATTCTCACTGTCCTTGTTGCAGAACCACTATCATCAATATTTCTCACTAG 570 0.4368 MAGKIPGVECARRRRFHQSGVWSDSPSSMAPHSYTRRSSFCLYTSNHESLSSSSLLQQRSLVYQAYPHEVLGGAAREAKQRLDERLGTQRKTEIKRKPKSKEKVGSEAELQIEIYGEKKNRSRKFSWSKLSWKATEQEECAVCLESFKNGDTLINLPCAHKFHSRCLEPWLQNNSHCPCCRTTIINISH 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00973 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Accr12g00973 189 Pfam Ring finger domain 139 181 IPR001841 -
Accr12g00973 189 SMART ring_2 140 180 IPR001841 -
Accr12g00973 189 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Accr12g00973 189 FunFam Zinc finger family protein 114 186 - -
Accr12g00973 189 SUPERFAMILY RING/U-box 128 186 - -
Accr12g00973 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF103 88 182 IPR042494 GO:0004842|GO:0016567
Accr12g00973 189 MobiDBLite consensus disorder prediction 82 102 - -
Accr12g00973 189 CDD RING-H2_PA-TM-RING 139 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00973 Accr-Chr12 10225798 10226563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00973 1 86 C3H Transcription Factor Family AT2G15580 50.000 2.96e-20 79.7