Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00972 ATGGCCGGGAAAATTCCCGGAGTGGAGTGTGCTCGAAGGAGAAGGTTCCATCAGAGTGGAGTATGGTCCGATTCCCCATCCTCCATGGCTCCTCATAGTTATACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAACCATGAATCTCTTTCTTCTTCCTCTTTACTGCAAAGAAGCTTGGTATATCAGGCATACCCACATGAAGTGCTGGGAGGTGCAGCTAGAGAAGCCAAACAGAGATTGGATGAGAGATTAGGAACACAGAGGAAAACAGAGATCAAAAGGAAACCGAAGAGCAAAGAGAAGGTGGGGAGTGAAGCAGAGTTACAGATAGAAATATATGGAGAAAAGAAAAATAGAAGCAGGAAATTCAGTTGGAGTAAATTGAGCTGGAAGGCAACAGAACAAGAGGAATGTGCAGTGTGCTTAGAATCATTCAAAAATGGCGACACACTTATAAATCTTCCGTGTGCACACAAGTTCCATTCAAGGTGTTTGGAGCCATGGCTGCAAAATAATTCTCACTGTCCTTGTTGCAGAACCACTATCATCAATATTTCTCACTAG 567 0.4356 MAGKIPGVECARRRRFHQSGVWSDSPSSMAPHSYTRRSSFCLYTSNHESLSSSSLLQRSLVYQAYPHEVLGGAAREAKQRLDERLGTQRKTEIKRKPKSKEKVGSEAELQIEIYGEKKNRSRKFSWSKLSWKATEQEECAVCLESFKNGDTLINLPCAHKFHSRCLEPWLQNNSHCPCCRTTIINISH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00972 188 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Accr12g00972 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF103 87 181 IPR042494 GO:0004842|GO:0016567
Accr12g00972 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 186 IPR013083 -
Accr12g00972 188 MobiDBLite consensus disorder prediction 81 101 - -
Accr12g00972 188 CDD RING-H2_PA-TM-RING 138 180 - -
Accr12g00972 188 FunFam Zinc finger family protein 113 185 - -
Accr12g00972 188 Pfam Ring finger domain 138 180 IPR001841 -
Accr12g00972 188 SMART ring_2 139 179 IPR001841 -
Accr12g00972 188 SUPERFAMILY RING/U-box 127 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00972 Accr-Chr12 10225798 10226563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00972 1 85 C3H Transcription Factor Family AT2G15580 51.064 2.40e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00972 - - qsa:O6P43_034430 242.276