Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00970 ATGGCTGGAAGTCTCCCCGGAGTAGAGTGTGCTCGAAGGAGAAGGTTTCATCAGAGTGGAGTATGGTCTGATTCACCATCCTCCATGGCTCCTCATACTTGCACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAACCATGAATCTCTTTCTTCTTCCTCTTTACTGCAGCAAAGAAGCTTGGTGTATCAGGTATACCCACATGAAGTACTGGGAGGGGCAGCTAGAGAAGCCAAACAGAGATTGGATGAGAGATTGGGAACACAGAGGAAAACAGAGATTAAAAGTAAGCAGAAGAATGGAGAGAAGGTGAGTAGTGAAGCAGACTTGCAGACAGAAATATATGGGGCAAAGAAAAATGGAAGCAGGAGATTCAGTTGGAGTAAATTGAGCTGGAAGGCAACAGAACAAGAGGAATGTGCAGTGTGCTTAGAATCATTCAAAAATGGTGACACACTCATAAATCTTCCATGTGCACACAAGTTCCACTCAAGGTGTTTGAAGCCATGGCTGCAAAATAATTCTCACTGTCCTTGTTGCAGAACCACCATCATCAATATTTCTCCCTAG 570 0.4421 MAGSLPGVECARRRRFHQSGVWSDSPSSMAPHTCTRRSSFCLYTSNHESLSSSSLLQQRSLVYQVYPHEVLGGAAREAKQRLDERLGTQRKTEIKSKQKNGEKVSSEADLQTEIYGAKKNGSRRFSWSKLSWKATEQEECAVCLESFKNGDTLINLPCAHKFHSRCLKPWLQNNSHCPCCRTTIINISP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00970 189 MobiDBLite consensus disorder prediction 85 106 - -
Accr12g00970 189 Pfam Ring finger domain 139 181 IPR001841 -
Accr12g00970 189 SUPERFAMILY RING/U-box 127 186 - -
Accr12g00970 189 FunFam Zinc finger family protein 114 186 - -
Accr12g00970 189 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Accr12g00970 189 MobiDBLite consensus disorder prediction 85 108 - -
Accr12g00970 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 187 IPR013083 -
Accr12g00970 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF103 80 183 IPR042494 GO:0004842|GO:0016567
Accr12g00970 189 SMART ring_2 140 180 IPR001841 -
Accr12g00970 189 CDD RING-H2_PA-TM-RING 139 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00970 Accr-Chr12 10201330 10202089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00970 1 86 C3H Transcription Factor Family AT2G15580 51.064 3.95e-20 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00970 12 10201330 10202089 Accr12g00970 12 10201330 10202089 ECH