Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00969 ATGGCTGGAAGTCTCCCCGGAGTAGAGTGTGCTCGAAGGAGAAGGTTTCATCAGAGTGGAGTATGGTCTGATTCACCATCCTCCATGGCTCCTCATACTTGCACTAGACGCTCTTCTTTCTGCTTGTACACTAGCAACCATGAATCTCTTTCTTCTTCCTCTTTACTGCAAAGAAGCTTGGTGTATCAGGTATACCCACATGAAGTACTGGGAGGGGCAGCTAGAGAAGCCAAACAGAGATTGGATGAGAGATTGGGAACACAGAGGAAAACAGAGATTAAAAGTAAGCAGAAGAATGGAGAGAAGGTGAGTAGTGAAGCAGACTTGCAGACAGAAATATATGGGGCAAAGAAAAATGGAAGCAGGAGATTCAGTTGGAGTAAATTGAGCTGGAAGGCAACAGAACAAGAGGAATGTGCAGTGTGCTTAGAATCATTCAAAAATGGTGACACACTCATAAATCTTCCATGTGCACACAAGTTCCACTCAAGGTGTTTGAAGCCATGGCTGCAAAATAATTCTCACTGTCCTTGTTGCAGAACCACCATCATCAATATTTCTCCCTAG 567 0.4409 MAGSLPGVECARRRRFHQSGVWSDSPSSMAPHTCTRRSSFCLYTSNHESLSSSSLLQRSLVYQVYPHEVLGGAAREAKQRLDERLGTQRKTEIKSKQKNGEKVSSEADLQTEIYGAKKNGSRRFSWSKLSWKATEQEECAVCLESFKNGDTLINLPCAHKFHSRCLKPWLQNNSHCPCCRTTIINISP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00969 188 SUPERFAMILY RING/U-box 126 185 - -
Accr12g00969 188 SMART ring_2 139 179 IPR001841 -
Accr12g00969 188 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Accr12g00969 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF103 79 182 IPR042494 GO:0004842|GO:0016567
Accr12g00969 188 MobiDBLite consensus disorder prediction 82 105 - -
Accr12g00969 188 Pfam Ring finger domain 138 180 IPR001841 -
Accr12g00969 188 FunFam Zinc finger family protein 113 185 - -
Accr12g00969 188 CDD RING-H2_PA-TM-RING 138 180 - -
Accr12g00969 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00969 Accr-Chr12 10201330 10202089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00969 1 85 C3H Transcription Factor Family AT2G15580 52.128 3.64e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00969 - - qsa:O6P43_023997 247.669