Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00967 ATGGGTTCGTCCAACAGTAGACTTCGGTCTCGCTCTCCCACCTACCGAGTCAATCGCACTAACCGCTTCAGATTCTCCGCCCTTCTCTGCGGTGGCTCCGCCTCTCGTTCCACTTTTGAGATGGAAGATCAATCAACTGAACTTCAGAGAGATTCTGCCACAGAATTTAATGATGAAAATCAGAAATTTGTTGACGCGTTGTCTATACCATGTACAGAAGCTAGAATTGGTAGCAGCCCCGGTACTGAAACTGCAAGCTCATCAGATACTAGAACTGAGTTGAGTGAGATTTCTACCGTTGAATGTTCCTCGAGAAGTGTTTCAACTAGTGGTCAAATGAAAAACTTGTCTGTAAGCAAGGAACTACTTCCTCCTCATCAGGTAAGTGCTGATCATAGTTATGATGAAACTTATAGGGATAGTAGCAACGCAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCAATCAATGACGTTGATGGTTCAGTGGATAGTGGTGTTTCTCAAATATCTCGTGAGACAACGTATCCAAGGAGCTCAACCTCACATGGGCAAGGAGATTCCAATGCTGATGGTATTTCTTTTGAGAATCACACTCATTCAGCTCTACCTATCCATAATTCTCGATTGGATCATGTTGCTCAAGTTTCCAATTTACCTGTAACTTCTGAGTTGCCTGAAAATGAAACCCGTCAAGAGGCGATACCTTCAGGTTTAGGTTTTCTTGTGTCCAATAGGGAAAGAGGGCAGGGAAATGACAGTATGTTTCAAGTTGATGTTGTCGCAATATCTTCCAATGTTTTGTCTGGTGGCAATACTGATGTCAGTGATCGTGATGCTAGAAGGGATAGTAGAAGACTATTTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACTTTTGTGTTCTCAGCTGGTGACATGGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAGTAATTCCCCAAATGATAGGGTTGGAGATGATTCTGGATATTTAGGCAGCAGGATTCATAGATTAAACGAGCGAATGAGGCACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGTGGCCTTGATGAGATTGGTCGGTTGAATCCTTCTTGTCCATTAGGACTCCACCCTGATGGCATGTGTTCATGCGAATCTTTTCAGATGGCTGAGGAGTCCAGTGCTCGTGCAAGTATATCAAGAATAGCTATGCTTGCTGAAGCTCTATTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTTCCAGCACCGGAATCAATTGTAGACTCTTTCCCTCTTAAGTGCCACAAAAAGATTGACACAGCTGATAATGGCAACGATGCTGAACAATGTCACATATGCCTGGCTGATTATGAAGAAGGAGACAAAATACGAGTTCTTCCATGCAACCATGAGTACCACATGTCATGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTCTGCCCTCTTTGTCGTGGGAATGTTTGTGGAGGGTCCAACGAGTCTTCTGCCTCTAACGCCACAGACGTACCATCTCAATGA 1629 0.434 MGSSNSRLRSRSPTYRVNRTNRFRFSALLCGGSASRSTFEMEDQSTELQRDSATEFNDENQKFVDALSIPCTEARIGSSPGTETASSSDTRTELSEISTVECSSRSVSTSGQMKNLSVSKELLPPHQVSADHSYDETYRDSSNAASTSFVEQQSSDPVSVNVSANKDAINDVDGSVDSGVSQISRETTYPRSSTSHGQGDSNADGISFENHTHSALPIHNSRLDHVAQVSNLPVTSELPENETRQEAIPSGLGFLVSNRERGQGNDSMFQVDVVAISSNVLSGGNTDVSDRDARRDSRRLFWDAFSRRSSRRFGDSRTFVFSAGDMDDPSSQDQWLLDLSSNSPNDRVGDDSGYLGSRIHRLNERMRHSRSEIWERLRGGLDEIGRLNPSCPLGLHPDGMCSCESFQMAEESSARASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVDSFPLKCHKKIDTADNGNDAEQCHICLADYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSNESSASNATDVPSQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00967 542 MobiDBLite consensus disorder prediction 175 208 - -
Accr12g00967 542 MobiDBLite consensus disorder prediction 75 117 - -
Accr12g00967 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 527 IPR013083 -
Accr12g00967 542 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Accr12g00967 542 MobiDBLite consensus disorder prediction 74 208 - -
Accr12g00967 542 MobiDBLite consensus disorder prediction 139 168 - -
Accr12g00967 542 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 536 - -
Accr12g00967 542 SUPERFAMILY RING/U-box 464 524 - -
Accr12g00967 542 Pfam Ring finger domain 478 521 IPR001841 -
Accr12g00967 542 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Accr12g00967 542 SMART ring_2 479 520 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00967 Accr-Chr12 10190437 10194237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00967 390 525 C3H Transcription Factor Family AT5G45290 51.656 1.09e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00967 - - pcin:129320229 815.839