Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00943 ATGGGTAGCAAAAATAAACAAGTTGGAGATAACAGTTGCAAAGCTTATGATAAGGATACTGAGGTATTTATTTCCATGTCTCAAGAGTTAAAGAGTGAAGGGAACAAACTGTTCCAAAAGAGGGATCATGAAGGGGCCATCTTAAAATATGAGAAAGCCATTAAATTGCTTCCAAGAAACCATATTGATGTGTCTTGTCTTCGGAGTAACATGGCGGCTTGCTACATGCAGATGGGATTCAGTGAGTACCCGAGGGCTATTCATGAATGCAATTTAGCTCTTGAAGTTACTCCAAAGTACAGTAAAGCCCTTTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAAACTAGATTTAGCTCTGAGAGATGTTGGTAATGTACTGAAGATGGAGCCAAACAATGTTATGGCGTTGGAAATTTTGGAGAAGGTGAAAAATTCACTCGAGGAGAAGGGATTAAATGTAGCCGATATAGCAATTGATATGCCTTCTGATCATGCTGAACTTCCTTGTGTGCCTCCAGAGGTAGTAAAAGAGAAGAAACACCAGAAGAGCAAAAAGGTTGAAAAGCTTGCTGAGGAGAAGTTGAAAGACAAGAGGTTGAAGGATAGTGTTGAGTTGAAGAAGGCTGCGAACAAATCCAAAGAGAAGTTGGAAGACAAGGAGGACGAGGACAATGTTGAGCCAATGAAGGCTGTGGACAAATCCAAAAAGAAGGCGACCAAGGCAAGGGTCAACGAGAAGAAGGCTGATATAAAGGAGGTTGTTGAGGAAGAGCTTAATGTTAGAAAGGAAGATGCAGCTAAGAAAATAGTGAAACTTGTTTTTGGTGAGGATGTTAGATTAGCAGAATTACAGGTCAATTGCAACCTCCAACATCTAAGGAATGTTATCAGCGACCGATTTCCTAGCCTGGAAGCAGTTCTTGTCAAATACAAGGATGAAGAAGGTGATTTAGTCACAATCACTTCTGATGAAGAATTGAGATGGGCGGAAACATCAACAGGATCAGAGGGTTGTATCCGCCTATACATAGTGAATGCTGATCCTAAGCAGGATCCTTTGTTTGAGAAAATTAATGAAAAGAAGAAGCAAAATCGTGTCAATAATGATGCACTTGAGAATGGTTGTGTGGTAAAAGAAAAGGAAATGATTAGGTCATCTTGTATTGAGGATTGGATAATCCAGTTTGCCGAACTTTTCAGGAACCATGTTGGAATTGGATCTGACAGATACTTAGATTTTCATGAACTTGGAATGAAACTCTATTCTGAGGCTATGGAGGAGACAGTTACCGGTGAAGAAGCACAAAGCCTGTTTGACATGGCAGGAGCTAAGTTTCAAGAAATGGCTGCTTTAGCATTGTTCAACTGGGGAAATGTTCACATGTCCAGGGCAAGGAAGAAAGTGAATTTCACAGAAGAATCTTCTAAAGAGAATCTTCATGAACAGATAAAAAACTCATATGAATGGGTGCAGCAAGAATATAAAACAGCAGGAGAAAAATATGAAGCAGCCATTAAAATCAAACTCGATTTTTATGAAGGCTTTTTGGCACTAGGCCAACAGCAGTTTGAGCGAGCAAAACTGTCTTGGTATTATGCAATTAACACACATGTTGACTTAGCAACATGGCCCTCTGCCGAGATTCTTCAACTTTACAACAATGCCGAGGAAAACATAGAGAAAGGAATGCATATATGGGAACAATTAGAAAATCGATCCTCAAATGAAGATTCTAAATCAAAGGATATCAAATTCCATTTACAGAATATGGGATTGGATTATCTATTGCAGAATATATCACCCGAAGAAGCAGCAGCACAGGAAGCAACTTTGAGGTCTCAAATGAATATCCTTTGGGGTACAATGCTATATGAACGTTCAATTATGGAATTCAAATTAGGTCTACCAGTATGGCATGAATGTCTGGAAGTTGCAGTAGAGAAGTTTGAACTTGCTGGAGTTTCTCCAACAGACATAGCTGTTATGTTGAAGAACCATTGTTCAAATAATACTAGTGCTGAAGGTCTAGGATTCAACATTGATGAAATAGTACAAGCGTGGAATGAGATGCATGAAGCCAAAAGGTGGCAGAGTCGAGTTTCGTCATTTCATTTGGAAACCTTATTCAGAAGGCGAACTTCAAAAATCTATCATGCCTTGGAGCTTGCATGA 2178 0.3949 MGSKNKQVGDNSCKAYDKDTEVFISMSQELKSEGNKLFQKRDHEGAILKYEKAIKLLPRNHIDVSCLRSNMAACYMQMGFSEYPRAIHECNLALEVTPKYSKALLKRARCYEALNKLDLALRDVGNVLKMEPNNVMALEILEKVKNSLEEKGLNVADIAIDMPSDHAELPCVPPEVVKEKKHQKSKKVEKLAEEKLKDKRLKDSVELKKAANKSKEKLEDKEDEDNVEPMKAVDKSKKKATKARVNEKKADIKEVVEEELNVRKEDAAKKIVKLVFGEDVRLAELQVNCNLQHLRNVISDRFPSLEAVLVKYKDEEGDLVTITSDEELRWAETSTGSEGCIRLYIVNADPKQDPLFEKINEKKKQNRVNNDALENGCVVKEKEMIRSSCIEDWIIQFAELFRNHVGIGSDRYLDFHELGMKLYSEAMEETVTGEEAQSLFDMAGAKFQEMAALALFNWGNVHMSRARKKVNFTEESSKENLHEQIKNSYEWVQQEYKTAGEKYEAAIKIKLDFYEGFLALGQQQFERAKLSWYYAINTHVDLATWPSAEILQLYNNAEENIEKGMHIWEQLENRSSNEDSKSKDIKFHLQNMGLDYLLQNISPEEAAAQEATLRSQMNILWGTMLYERSIMEFKLGLPVWHECLEVAVEKFELAGVSPTDIAVMLKNHCSNNTSAEGLGFNIDEIVQAWNEMHEAKRWQSRVSSFHLETLFRRRTSKIYHALELA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00943 725 Coils Coil 201 228 - -
Accr12g00943 725 SUPERFAMILY CAD & PB1 domains 270 357 - -
Accr12g00943 725 SUPERFAMILY TPR-like 15 148 IPR011990 GO:0005515
Accr12g00943 725 Coils Coil 238 258 - -
Accr12g00943 725 CDD PB1 271 345 - -
Accr12g00943 725 ProSiteProfiles TPR repeat profile. 27 60 IPR019734 GO:0005515
Accr12g00943 725 ProSiteProfiles TPR repeat profile. 101 134 IPR019734 GO:0005515
Accr12g00943 725 PANTHER PROTEIN CLMP1 5 723 IPR044517 -
Accr12g00943 725 SMART PB1_new 269 348 IPR000270 GO:0005515
Accr12g00943 725 ProSiteProfiles PB1 domain profile. 269 348 IPR000270 GO:0005515
Accr12g00943 725 Gene3D - 256 347 - -
Accr12g00943 725 Pfam PB1 domain 272 346 IPR000270 GO:0005515
Accr12g00943 725 Gene3D Tetratricopeptide repeat domain 25 154 IPR011990 GO:0005515
Accr12g00943 725 SMART tpr_5 65 100 IPR019734 GO:0005515
Accr12g00943 725 SMART tpr_5 27 60 IPR019734 GO:0005515
Accr12g00943 725 SMART tpr_5 101 134 IPR019734 GO:0005515
Accr12g00943 725 MobiDBLite consensus disorder prediction 207 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00943 Accr-Chr12 9870529 9872781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00943 10 134 Calmodulin-binding Proteins AT3G25230 32.117 1.34e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00943 K26538 - gmx:100807387 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00943 12 9870529 9872781 Accr12g00943 12 9870529 9872781 ECH