Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00898 ATGGAAAGCAAAGGAATGGGACTGAAGCCACAGCCCAAAAAGAATCTATGGAAGCCTGAGGAAGACGTGGTTCTGAAAGCATACATTGAAGCTCACGGTGAAGGAAACTGGGAAGCAGTTTCCAGAAATTCAGGTCTGAATAGAGGAGGGAAGAGTTGCAGGCTAAGATGGAAGAACTATTTGAGACCAGACATTAAACGAGGAGGAATGTCTGAAGACGAAGAAGACCTTATCATCAGACTCCATAAGCTTCTTGGCAACCGATGGTCACTGATAGCTGGAAGAATCCCTGGTAGAACCGATAATGAAGTGAAGAATTACTGGAATACCCATTTGAACAAGAGATGCCCTCGAGGCAAAAGGAAAACCATCGATTCAAACAACGACGACCAAGAAACCAGCAAGAAACCACGAATCAGCGACTCCGACTTGCCTATTTCCGCAAGCATCGCAGAGACGGGGTTGTTAGATGCGAGGAAAGAAGAGAACAGCAGTAACATTACAAGCTCTTGGATCGTCGAATTGCAGAGCTTCCACTGTGACCTAGATTTTCCGATTGTGCCTGGGAACAGTGCGGTATTTGGTTTCGACGATGAGCCTTTCACGACGAACTTGGATTCCATTGTCCTGTTTGAAACTGATGCTTTAGACTATGGTTCGTTGGAGTCCAATTCGCATAAGCAATACTTCATGCCATAG 699 0.4549 MESKGMGLKPQPKKNLWKPEEDVVLKAYIEAHGEGNWEAVSRNSGLNRGGKSCRLRWKNYLRPDIKRGGMSEDEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEVKNYWNTHLNKRCPRGKRKTIDSNNDDQETSKKPRISDSDLPISASIAETGLLDARKEENSSNITSSWIVELQSFHCDLDFPIVPGNSAVFGFDDEPFTTNLDSIVLFETDALDYGSLESNSHKQYFMP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00898 232 Gene3D - 16 66 - -
Accr12g00898 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Accr12g00898 232 Gene3D - 70 141 - -
Accr12g00898 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Accr12g00898 232 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Accr12g00898 232 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Accr12g00898 232 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr12g00898 232 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr12g00898 232 MobiDBLite consensus disorder prediction 119 139 - -
Accr12g00898 232 CDD SANT 70 112 IPR001005 -
Accr12g00898 232 CDD SANT 17 61 IPR001005 -
Accr12g00898 232 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 151 - -
Accr12g00898 232 MobiDBLite consensus disorder prediction 118 143 - -
Accr12g00898 232 FunFam MYB-related transcription factor 13 66 - -
Accr12g00898 232 FunFam Transcription factor TT2 70 140 - -
Accr12g00898 232 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr12g00898 232 SMART sant 13 63 IPR001005 -
Accr12g00898 232 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00898 Accr-Chr12 9177720 9179042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00898 1 194 MYB Transcription Factor Family AT5G52600 51.741 2.71e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00898 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00898 K09422 - qsa:O6P43_002410 280.411