Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00897 ATGGACCTTCAACTAGGCCTCTCTCTCCCCTCCTTTCGTTCTGATGAAGATGATGCTCTCTTCACTTCGTTCACTCTCTCTCACAAGAAACGCAGTTTCAACGATCTCCTTCATCACCATCCAAAACTCAGCCAACTAGAAGAAGAAGTAGACGACGACGACAACATTTTGCTTCCCACCACTCTGCCTCTCCTTCCCTTAACACCTTCCCTTGGTGCAGACCTTGACGACAACGACCTCCATACCAGCTCCTCCATTGTCACCAAATATGATGGGGATGACGGTGGACAATCTGCAGCAGTAGGGTGGCCGCCGTTGATGTCTCAGAGGAAGAAGCTTCACCTTGATCATGAAGAAGAAGATGCCGTGGCGGGGATTCCTCATAAACGTGCTTCTGGAGAATCTAATAATGCCTTGTACGTTAAAGTAAGGATGGAGGGAGAAGGAATTGGACGAAAGATTGATCTTAGCTTGCATCACTCTTTTCTGAAGCTCAAGCAAACTTTGATCGCCATGTTTGGAAAATGTAATGACCATTCAGACAGCTATGAATTAGCTTATCAGGACAGAGAAGGTGACTGGTTGCTTGCAGAGGATCTGCCATGGAAAAACTTCCTCCAGTGTGCTCAACGTCTCAAATTGTTGAAGAGGACAGGCTAA 660 0.4667 MDLQLGLSLPSFRSDEDDALFTSFTLSHKKRSFNDLLHHHPKLSQLEEEVDDDDNILLPTTLPLLPLTPSLGADLDDNDLHTSSSIVTKYDGDDGGQSAAVGWPPLMSQRKKLHLDHEEEDAVAGIPHKRASGESNNALYVKVRMEGEGIGRKIDLSLHHSFLKLKQTLIAMFGKCNDHSDSYELAYQDREGDWLLAEDLPWKNFLQCAQRLKLLKRTG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00897 219 ProSiteProfiles PB1 domain profile. 138 219 IPR000270 GO:0005515
Accr12g00897 219 Pfam AUX/IAA family 29 217 IPR033389 -
Accr12g00897 219 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 217 IPR003311 GO:0005634|GO:0006355
Accr12g00897 219 SUPERFAMILY CAD & PB1 domains 132 214 - -
Accr12g00897 219 Gene3D - 139 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00897 Accr-Chr12 9159324 9161127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00897 140 215 B3 DNA Binding Superfamily AT5G20730 37.500 2.80e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr12g00897 AUX_IAA 1.2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00897 K14484 - gmx:100808466 160.999