Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00879 ATGTCGAGCTGCAACATCGATGTTGCCCCTGAGCAACTTTGCTACATCCCTTGCAACTTTTGCAACATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTATTTGACATAGTGACGGTTCGATGTGGACACTGCAGCAATCTATGGTCAGTGAACATGGCTGCTGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGCAGCTGGTGGACACAACAATCAGTACAGAATTGAGACAGGTTCCTCTTCCAAATGCAACAATAATATGATTTCAATGAGTGCACCCTCCAATCATCATGTTTCTAAGGACAGAATTGTGAACCGCCCTCCCGAGAAGAAGCAGCGCGTACCTTCTGCATATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCTAATAATCCAGATATCTGTCACAGGGAAGCATTCAGTACAGCTGCCAAGAACTGGGCACACTTCCCTCATATTCATTTTGGGCTGATGTTGGAGGCTAACAAAAATCAAGCTAAGATGGAGAATGGGAGTGAGAAGCATTTAATGACGAGGGCAGCACTTTTGAACAAATGA 570 0.4474 MSSCNIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVQAAGGHNNQYRIETGSSSKCNNNMISMSAPSNHHVSKDRIVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPDICHREAFSTAAKNWAHFPHIHFGLMLEANKNQAKMENGSEKHLMTRAALLNK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00879 189 CDD HMG-box_SF 115 151 - -
Accr12g00879 189 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
Accr12g00879 189 SUPERFAMILY HMG-box 102 155 IPR036910 -
Accr12g00879 189 FunFam axial regulator YABBY 5-like 99 157 - -
Accr12g00879 189 Gene3D High mobility group box domain 98 180 IPR036910 -
Accr12g00879 189 Pfam YABBY protein 9 161 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00879 Accr-Chr12 8900887 8904987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00879 8 172 C2C2-YABBY Transcription Factor Family AT2G26580 73.939 8.69e-83 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Accr12g00879 YABBY 8.5e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00879 K25796 - gmx:100804731 330.102