Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00875 ATGTCGAATCAATTCGACTTGAATGGGCAAGTTCGTAGTGAAACAATTCGACTAATGCTTTTGGATAATGAAGGTGTAGAGACGACAATATTACTAGGTTCTTATGATTCAGACATGGACGATGATGATGAGGTGGAAGAAGCAGGAATAATGGTGAATCCTGCAACTCAAAAGTCAATAGAAAGTTTAGAAAAGGTCAGAATTGAAGAGCCTACATTGTGTTCTATATGTTTCCAGGACATTCTATCAAATAAAAGACAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGTTCAAATTCCTAAACCTTGTGGTCATGTGTATCACCTTAATTGCATCCTTAAGTGGTTCAACAAGCACAATACTTGTCCTTTGTGCCGCCGCAAGATTCCAAGCTAG 396 0.3838 MSNQFDLNGQVRSETIRLMLLDNEGVETTILLGSYDSDMDDDDEVEEAGIMVNPATQKSIESLEKVRIEEPTLCSICFQDILSNKRQEEEEEEEEAVQIPKPCGHVYHLNCILKWFNKHNTCPLCRRKIPS 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00875 131 SMART ring_2 74 125 IPR001841 -
Accr12g00875 131 SUPERFAMILY RING/U-box 62 129 - -
Accr12g00875 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 41 130 - -
Accr12g00875 131 ProSiteProfiles Zinc finger RING-type profile. 74 126 IPR001841 -
Accr12g00875 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 131 IPR013083 -
Accr12g00875 131 CDD RING-H2 74 126 - -
Accr12g00875 131 Pfam RING-H2 zinc finger domain 73 126 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00875 Accr-Chr12 8862246 8862641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00875 32 129 C3H Transcription Factor Family AT5G66070 32.353 6.25e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00875 - K11982 vvi:104880080 75.485