Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00869 ATGATGTCATCCTGCGTTGTCCAGGATGTGTCAGGATTTGCCTGGCCGTACCAATCTTCTATGTATCATTCTAATTTTATTGGATGTTCCGAGGGGACACATCATACATTTTTATTTCATCTATTTTCATATTGGGTCCCTTGGTTTTTATTTGAATGTTGTGTTTTGTGGAGCAGGAAGAGGAGGGTGTGGCTGGGGACATTTGAGACGGCGGAAGAAGCGGCGAGAGCATACGATCAAGCTGCCATTTTGATGAGTGGACGGAATGCGAAGACGAATTTCCCGATATCCCAGACACCGGAGGGCGATCCTAAGGGGGCGGCCACTGATCATAATAACAACAAGGCGGCGAAGGATCTGGAGGAGATTCTACACGCTAAGCTGAGGAAATGTGGGAAGCTGCCGTCGCCATCGATGACGTGCCTGAGGCTGGACACGGAGAACTCCAACATCGGAGTGTGGCAGAAACGCGCGGGCCAGCGTTCGGATAACTCCAACTGGGTTATGACAGTCGAGCTCGGAAAGAAGACTAACAACAGTGATAATGGGTCAGAGAAAACGACGTCGGCTTCGTGGACTACGTGCGATGAGTCTGCAATCTCATCAGAAGCAAATAGTGAAGTGGCTATGGTGGGAGGAGGAGGAATGAACGAAGAAGAAAGGATCGCACTGCAAATGATCGAAGAACTTCTTAACAGAAACTGTCCAAGTCCTCCTCCTTTACCAGGACCTTCATTTCATAATATGGTAGTTGAAGAAGACAGCCAGGTTGTTCATCATGGGGAAAGCTTTCTGTTTTGA 801 0.4819 MMSSCVVQDVSGFAWPYQSSMYHSNFIGCSEGTHHTFLFHLFSYWVPWFLFECCVLWSRKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPISQTPEGDPKGAATDHNNNKAAKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSNIGVWQKRAGQRSDNSNWVMTVELGKKTNNSDNGSEKTTSASWTTCDESAISSEANSEVAMVGGGGMNEEERIALQMIEELLNRNCPSPPPLPGPSFHNMVVEEDSQVVHHGESFLF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00869 266 ProSiteProfiles AP2/ERF domain profile. 25 95 IPR001471 GO:0003700|GO:0006355
Accr12g00869 266 SUPERFAMILY DNA-binding domain 45 97 IPR016177 GO:0003677
Accr12g00869 266 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 59 190 - -
Accr12g00869 266 CDD AP2 58 97 IPR001471 GO:0003700|GO:0006355
Accr12g00869 266 Gene3D AP2/ERF domain 42 97 IPR036955 GO:0003700|GO:0006355
Accr12g00869 266 SMART rav1_2 57 101 IPR001471 GO:0003700|GO:0006355
Accr12g00869 266 Pfam AP2 domain 50 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00869 Accr-Chr12 8717034 8717834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00869 60 234 AP2-EREBP Transcription Factor Family AT1G15360 54.144 6.18e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr12g00869 AP2 1.2e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00869 - - gmx:100814893 226.868