Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00868 ATGGTGCATTCAAAGAAGTTCAGAGGTGTCAGACAACGTCACTGGGGCTCATGGGTCTCCGAAATTCGCCACCCTCTCCTGAAGAGGAGGGTGTGGCTGGGGACATTTGAGACGGCGGAAGAAGCGGCGAGAGCATACGATCAAGCTGCCATTTTGATGAGTGGACGGAATGCGAAGACGAATTTCCCGATATCCCAGACACCGGAGGGCGATCCTAAGGGGGCGGCCACTGATCATAATAACAACAAGGCGGCGAAGGATCTGGAGGAGATTCTACACGCTAAGCTGAGGAAATGTGGGAAGCTGCCGTCGCCATCGATGACGTGCCTGAGGCTGGACACGGAGAACTCCAACATCGGAGTGTGGCAGAAACGCGCGGGCCAGCGTTCGGATAACTCCAACTGGGTTATGACAGTCGAGCTCGGAAAGAAGACTAACAACAGTGATAATGGGTCAGAGAAAACGACGTCGGCTTCGTGGACTACGTGCGATGAGTCTGCAATCTCATCAGAAGCAAATAGTGAAGTGGCTATGGTGGGAGGAGGAGGAATGAACGAAGAAGAAAGGATCGCACTGCAAATGATCGAAGAACTTCTTAACAGAAACTGTCCAAGTCCTCCTCCTTTACCAGGACCTTCATTTCATAATATGGTAGTTGAAGAAGACAGCCAGGTTGTTCATCATGGGGAAAGCTTTCTGTTTTGA 705 0.5106 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPISQTPEGDPKGAATDHNNNKAAKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSNIGVWQKRAGQRSDNSNWVMTVELGKKTNNSDNGSEKTTSASWTTCDESAISSEANSEVAMVGGGGMNEEERIALQMIEELLNRNCPSPPPLPGPSFHNMVVEEDSQVVHHGESFLF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00868 234 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Accr12g00868 234 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Accr12g00868 234 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Accr12g00868 234 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Accr12g00868 234 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Accr12g00868 234 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Accr12g00868 234 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 159 - -
Accr12g00868 234 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Accr12g00868 234 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Accr12g00868 234 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00868 Accr-Chr12 8717034 8717962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00868 1 202 AP2-EREBP Transcription Factor Family AT1G15360 58.654 8.43e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr12g00868 AP2 9.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00868 - - gmx:100814893 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00868 12 8717034 8717962 Accr4g00786 4 7493401 7494076 ECH
Accr12g00868 12 8717034 8717962 Accr12g00868 12 8717034 8717962 ECH