Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00854 ATGAGTTTTCCTGATCATCACTCTGGCTTCATGCTACCGCCGATACCGTTTGCGGCGGATGACGATTCCAATGGAAGGTGGCCACAATTCCCAATTAACAACGAACTGTTCGATTCACATTCAACTTTTGATCAGTTTCCTCCCTTCAAGAGGCCCAGAACATCCGAAAGCAATCACTTCGATCCCTCGCCATTCCCTCCGGCGCCGCCCATGGATTCCAGGATGCAGAATCCACAAAATCCTCCAACAAACAGAGGAGGAACGAGCCACATTTTTTTTAAGACTCGATTGTGTGCGAAATTCAGAATGGGTACCTGTAGGAACGGCGAGAGTTGCAATTTTGCTCATGGCAATGAGGACATGAGGCAGCCACCTCCAAATTGGCCGGAGCTTGTAGGTTTACGCGATGAAGAAAGGTCATCTGGAAATTGGGACGATGACCAGAAAATCATACATAAGATGAAGCTTTGCAAGAAGTATTACAATGGTGAGGAATGCCCTTATGGTGAAAGGTGCAATTTTCTTCATGAAGACCCGTCCAAGTTCAGGGATGATGCAGGGAGGTGCAGAGAGAGCTCAGCTATAAGCCTTGTGGCTAATGGATCTCCAAAGTCGCACTTGAATGCCCCTAATAATTCAGACAATAATAAGAATGTCAACAATGGGTGTGATGGTTTTAGGACAAATGGGAAGGCTCCTTTCTGGAAGACTAAGTTGTGCAGCAAGTGGGAGATAACAGGACAGTGCCCTTTCGGTGATAAATGTCATTTTGCCCATGGACAAGCAGACTTACAAGTTCCTGGTGGACGCATTGAAGCAGAAACTATAGTAGCTGCGTCAATTCCTGTGATTGATGTATCTCCTATCAACGCTGTAAGTATACTTGATTCAAAGGAAGATGAGCAAAAAAAGAAGAATTTGCTGAAGTGGAAAATAAACAAGAAGGTCGATCGAATTTATGCTGATTGGCTTGATGACCTTCCATTGCCAAGGTAG 996 0.4498 MSFPDHHSGFMLPPIPFAADDDSNGRWPQFPINNELFDSHSTFDQFPPFKRPRTSESNHFDPSPFPPAPPMDSRMQNPQNPPTNRGGTSHIFFKTRLCAKFRMGTCRNGESCNFAHGNEDMRQPPPNWPELVGLRDEERSSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRCRESSAISLVANGSPKSHLNAPNNSDNNKNVNNGCDGFRTNGKAPFWKTKLCSKWEITGQCPFGDKCHFAHGQADLQVPGGRIEAETIVAASIPVIDVSPINAVSILDSKEDEQKKKNLLKWKINKKVDRIYADWLDDLPLPR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00854 331 MobiDBLite consensus disorder prediction 41 89 - -
Accr12g00854 331 SUPERFAMILY CCCH zinc finger 90 123 IPR036855 GO:0046872
Accr12g00854 331 SUPERFAMILY CCCH zinc finger 233 265 IPR036855 GO:0046872
Accr12g00854 331 FunFam Zinc finger CCCH domain-containing protein 87 123 - -
Accr12g00854 331 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
Accr12g00854 331 SUPERFAMILY CCCH zinc finger 151 178 IPR036855 GO:0046872
Accr12g00854 331 MobiDBLite consensus disorder prediction 62 76 - -
Accr12g00854 331 Gene3D - 228 266 - -
Accr12g00854 331 Gene3D - 148 184 - -
Accr12g00854 331 Gene3D - 87 123 - -
Accr12g00854 331 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Accr12g00854 331 FunFam Zinc finger CCCH domain-containing protein 39 148 180 - -
Accr12g00854 331 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Accr12g00854 331 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Accr12g00854 331 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Accr12g00854 331 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Accr12g00854 331 FunFam Zinc finger CCCH domain-containing protein 229 266 - -
Accr12g00854 331 PANTHER CCCH ZINC FINGER/TIS11-RELATED 54 183 IPR045877 GO:0003729
Accr12g00854 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Accr12g00854 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 176 IPR000571 GO:0046872
Accr12g00854 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 261 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00854 Accr-Chr12 8585756 8587713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00854 234 265 C3H Transcription Factor Family AT1G68200 56.250 2.62e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr12g00854 zf-CCCH 1.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00854 - - pcin:129320676 586.26