Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00833 ATGTCTAAAGCTCAAACACAAATACTCTTCTACTTGTTCATCACCTTGTTCATCGATCTTCCCTTCCCTTCCTTTGCTGATGTTGGTGTTGCTGCTCAATATTCTCCTCCATATTTACCAACGGGATGCTACGGCGGCGAGGCATTACAGTTCCCGTCGAGCAACCTGTTTGCGGCGGCCGGAGATGGAATATGGGATAATGGGGCGGCGTGTGGGAGGCAGTACTTGGTGAGGTGCATAAGTGCAGAGAAACCCAGGACTTGCATTCCGCAGCAGAGCATTCAGGTCAAGATCGTTGACTATGCCTTCTCCACCGTGTCGACTCCGTCCGCCACCGGAACCACAATGGTTCTCTCTCAGAAGGCTTTCCAGACCATTGCTAATTCATCTGCTGCTCTCATCAACATAGAGTTTCAACAGGTCTGA 426 0.5023 MSKAQTQILFYLFITLFIDLPFPSFADVGVAAQYSPPYLPTGCYGGEALQFPSSNLFAAAGDGIWDNGAACGRQYLVRCISAEKPRTCIPQQSIQVKIVDYAFSTVSTPSATGTTMVLSQKAFQTIANSSAALINIEFQQV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00833 141 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 7 140 - -
Accr12g00833 141 CDD DPBB_EG45-like 27 139 - -
Accr12g00833 141 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 141 IPR007112 -
Accr12g00833 141 Gene3D - 27 141 IPR036908 -
Accr12g00833 141 SUPERFAMILY Barwin-like endoglucanases 14 141 IPR036908 -
Accr12g00833 141 SMART dpbb_1 58 138 IPR007112 -
Accr12g00833 141 Pfam Lytic transglycolase 63 137 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00833 Accr-Chr12 8396790 8397539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00833 5 141 Expansin Gene Family AT4G17030 25.828 3.31e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00833 - - gmx:100306194 203.756