Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00825 ATGACCATTGACGACGAGAGCTCCATATACGTTGGAGGTCTTCCCTGCGATGCCACCGAAGATACCATCCGCACCGTCTTTGATCTGTATGGCGCCATTCTTGATGTCAAGATTATTAATGATGTTCGGAATAGAGGAAAGTGCTATTGTTTTGTAACTTTCACAAATCCTCGATCAGCAGTTGATGCAATCAATGACATGAATGGAAGGACCATTGAGGGGCACGTGGTTATGGTAAATGCGGTAAGGACTCGAGGTGGAAGATCACATTTTGGTGGAGAACCTATTCGTCATGATACTGATAGGAATGGAGACTGGGATCGTGGTAGAGATCGCACCCGAGATTATAGTCATGACAGGGACAGGCACAGTAATAGAAATAGTGATTGGTCTCGAGAGCGTGATAGATCACGGGAACATGATAGATCTCGAAACTTTGAGCATGAAGGGGATAGACGATATGAGCATGAACATTATCATGATCAAGAAAGAGAACCTTTGCATATTAAAGATCGAGTTGAAGAGAGATATCAGGCTGATGATGAAGAAGAACACGGCAAAGTACTTGGTCAAGCTACACAAAGAGACTATGACCTAGATTATGATACAGTCAGGAAGATGGACAGAACTTACGATCCTGACAGAAGTTTTGATGGGGATAGAAATGAACACTCAAGGAGAAACAATGGATTAAATGTTACAAAACAACGTAACATGAATTTTTCATCAGACTCAAATGGTAACCTCAATGACGAGATTGCAGATGAATTAGAGAGGTCTACTCAAAGGCTTGGTCAACTGAAAAAAGAGGTCTCTCAGTTGGAAGAAAAGTTACAAGAGAAACGACATCTCGTTGCAGATTTACAAAAGCAATCCAGGAAACTGGAGGATGCATTAATTAATGCAAAGAAATATTCTTCATATCATCAGGTGCAGTTGGCCAAGGTACACGAATGTTTTCTGCAACTGAAAGATTACTCAGAGCGACTAAAAACCAGTGAAAAAGAACTTCAGGGTCTGGTTGATACGATAAGACTAGAGAGTGATGGTGATGGAGAAGATGTGGCTTGA 1071 0.4136 MTIDDESSIYVGGLPCDATEDTIRTVFDLYGAILDVKIINDVRNRGKCYCFVTFTNPRSAVDAINDMNGRTIEGHVVMVNAVRTRGGRSHFGGEPIRHDTDRNGDWDRGRDRTRDYSHDRDRHSNRNSDWSRERDRSREHDRSRNFEHEGDRRYEHEHYHDQEREPLHIKDRVEERYQADDEEEHGKVLGQATQRDYDLDYDTVRKMDRTYDPDRSFDGDRNEHSRRNNGLNVTKQRNMNFSSDSNGNLNDEIADELERSTQRLGQLKKEVSQLEEKLQEKRHLVADLQKQSRKLEDALINAKKYSSYHQVQLAKVHECFLQLKDYSERLKTSEKELQGLVDTIRLESDGDGEDVA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00825 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Accr12g00825 356 SMART rrm1_1 8 80 IPR000504 GO:0003723
Accr12g00825 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Accr12g00825 356 CDD RRM_SF 9 80 - -
Accr12g00825 356 PANTHER GEO13361P1-RELATED 6 205 - -
Accr12g00825 356 SUPERFAMILY RNA-binding domain, RBD 4 110 IPR035979 GO:0003676
Accr12g00825 356 MobiDBLite consensus disorder prediction 209 230 - -
Accr12g00825 356 Coils Coil 323 343 - -
Accr12g00825 356 MobiDBLite consensus disorder prediction 209 250 - -
Accr12g00825 356 MobiDBLite consensus disorder prediction 86 169 - -
Accr12g00825 356 Gene3D - 2 97 IPR012677 -
Accr12g00825 356 Coils Coil 250 305 - -
Accr12g00825 356 MobiDBLite consensus disorder prediction 90 169 - -
Accr12g00825 356 MobiDBLite consensus disorder prediction 231 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00825 Accr-Chr12 8305251 8308620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00825 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 31.169 6.57e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00825 - - vun:114179118 420.624