Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00824 ATGGCTTCTCCCTCTGAACTAAGCCTGATGGATTGCAAACCCCACAGCTATTCTTTGCTTCTGAAATCATTTGGAGATCAGGCAGATCATACCTACAAGCTTGAGGACTTCCTATCTCGCCTCGAAGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAGCTCCTCACCAACGCTGTGGAGGCATCAAGGCAGCAACTTCAGGCGTACAGAGCAAATCAAGGTACCACGAGGCCAGTGCTAGAAGAATTCATACCCATAAAGCAATCAACCTCTGAAAGCTCTGAGAAGGTACCCAACATAGCAGACAATAAGGCAAATTGGATGACATCTGCTCAATTATGGAGTAGCCAAGCAAATGAAGGAACCAAGCCCCAATCCACAATCATCACATCCCCTACTAAAGAAGCTGAAATTGGTTTCAGTGTGAGCCCTAAGCTCGCTCTACTTGAAAACAAACAGAGGAATGGTGGAGGAGCCTTCCTACCATTCTCAAAAGAAAGAAACTCGTCATCATCATGCCAAAGTAATAACTCCACATTACGGGTCATCCCAGAGTTGGCCCTGGCCTCTGTTGAGAAAGAAATTATGGAGGATAAGAAATGCACAGAACCAGAAAATAATGCAGTGTCATGTCCGAAGAGGGAAAATTCCGGTAAAGCCTCAGGATCAGGGAACTGTACTCTGGTCACTGATCAAGGAAAAGCAGCTCCATCAGTTGCATCTGACTCACAAACAACCACAACCACCACCACCTCTAACCAAACTCATCGGAAAGCAAGAAGATGCTGGTCACCTGACCTGCACCGCCGATTTGTAAATGCTCTTCAGATGCTAGGTGGATCTCAAGTGGCTACCCCAAAGCAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACTAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCATACCCGACGTCCCAGTCCAAGCCCACAAGCAGCCGGCTCACCCGCCCCGCAGCTCGTAGTTTTAGGGGGAATCTGGGTCCCACCGGAATACGCTGCCGCCGCCGCTCACACTGGCGCACCCGCCATCTATAGCCCGCACCCTACCTCCCACGCGCCGCCGCCGCACTACTGTTCCTCAACGCCGATGCACCAAGAGTTCTACGCAGCCGCGGCGGCGCCGCAGTCAGGTCCGCCGCACTACCAAACGCTGCTCCATCACCATCTGCAGATGTACAAAACGAATTCGTCGCACCAGGGCTCGCCGGCATCGGAGATGCGAGGAGGGGGGGAGAGGTCGGAGAGTATAGAGGACGGGAAGTCGGAGAGCAGCAGCTGGAAGGGAGAGAGTGGGGAGAACGAAGGGAAGAGGAAAGGGCTGGCAGCACTGAGAGAAGAAGGAGAAGAGAGTAGTCGGAGCGAGACGACTCTGAAATTCTAG 1437 0.5164 MASPSELSLMDCKPHSYSLLLKSFGDQADHTYKLEDFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQAYRANQGTTRPVLEEFIPIKQSTSESSEKVPNIADNKANWMTSAQLWSSQANEGTKPQSTIITSPTKEAEIGFSVSPKLALLENKQRNGGGAFLPFSKERNSSSSCQSNNSTLRVIPELALASVEKEIMEDKKCTEPENNAVSCPKRENSGKASGSGNCTLVTDQGKAAPSVASDSQTTTTTTTSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAAGSPAPQLVVLGGIWVPPEYAAAAAHTGAPAIYSPHPTSHAPPPHYCSSTPMHQEFYAAAAAPQSGPPHYQTLLHHHLQMYKTNSSHQGSPASEMRGGGERSESIEDGKSESSSWKGESGENEGKRKGLAALREEGEESSRSETTLKF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00824 478 FunFam Myb family transcription factor 264 322 - -
Accr12g00824 478 Pfam Myb-like DNA-binding domain 267 318 IPR001005 -
Accr12g00824 478 Gene3D - 264 322 - -
Accr12g00824 478 MobiDBLite consensus disorder prediction 429 478 - -
Accr12g00824 478 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 446 IPR044787 GO:0003700|GO:0006355
Accr12g00824 478 MobiDBLite consensus disorder prediction 205 266 - -
Accr12g00824 478 NCBIfam myb-like DNA-binding domain, SHAQKYF class 265 320 IPR006447 GO:0003677
Accr12g00824 478 Coils Coil 59 79 - -
Accr12g00824 478 SUPERFAMILY Homeodomain-like 262 323 IPR009057 -
Accr12g00824 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 322 IPR017930 -
Accr12g00824 478 Coils Coil 34 54 - -
Accr12g00824 478 MobiDBLite consensus disorder prediction 216 265 - -
Accr12g00824 478 MobiDBLite consensus disorder prediction 413 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00824 Accr-Chr12 8300369 8302651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00824 1 478 G2-like Transcription Factor Family AT2G03500 51.004 4.47e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Accr12g00824 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00824 - - gmx:100807925 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00978 8 24800809 24803445 Accr12g00824 12 8300369 8302651 CCT
Accr12g00824 12 8300369 8302651 Accr12g00824 12 8300369 8302651 ECH