Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00806 ATGTCGTCATCAAGTGGAACCGTTTGGAGCTATGAAGAAGAAAAGGCCTTTGAGAATGCCATCGCAATGCATGGGGTTGAAGAGGAGTCAGAAGAACAATGGGAGAAGATTGCATCAGCTGTATCCAGCAAAAGCATGGAAGAATTGAAGCAACATTACAAATTGTTATTAGAAGATGTAAGTGCAATAGAGGCAGGCCATATTCCACTTCCAAACTATACTGGTGGCGGTGGAGAAGAAGCTACTTCTTCAAGCAAGGAATTGCATGCTTCTTCTTCCAAAGCTTCCACCTCAGAAAAAAGATCTAATTGCAATTTCAGAACTGGGTTTTCTGGGTTGGGACATGAATCTTCTGGCCATACTGCTAAAGGAGGCTCTTCAAGATCTTCAGAACAAGAAAGGCGAAAAGGAATTCCCTGGACAGAAGAAGAGCATAGGCTATTTCTACTTGGTCTTGACAAATTTGGGAAGGGAGATTGGAGGAGCATATCAAGGAACTTTGTGATGTCAAGGACTCCAACTCAAGTGGCAAGTCATGCACAGAAGTACTTTATAAGGTTGAATTCCATGAACAGAGATAGGAGGAGGTCAAGCATCCATGACATAACAAGTGTGAACAATGGGGATGTGGCTAATAACCAGGCACCAATAACAGGGCAACACACAAACACAAACCCATCAAGCACAATGGGTGTAGGACAGTCTGTGAAACATAGGGCTCATCAACCCCATATACCCGCTGGTATTGGCATGTATGGGGCACCATTAGGGCACCCTGTGGCTGCTGCTCCTGGTCATATGGCTTCTGCTGTAGGAACCCCTGTTATGATGCCTCCTGGACCCCATCCTCATCCTCCTTATGTTGTTCCAATGGCTTACCCTATGGCATCTCCAACAATGCACAGATGA 909 0.451 MSSSSGTVWSYEEEKAFENAIAMHGVEEESEEQWEKIASAVSSKSMEELKQHYKLLLEDVSAIEAGHIPLPNYTGGGGEEATSSSKELHASSSKASTSEKRSNCNFRTGFSGLGHESSGHTAKGGSSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVMSRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHTNTNPSSTMGVGQSVKHRAHQPHIPAGIGMYGAPLGHPVAAAPGHMASAVGTPVMMPPGPHPHPPYVVPMAYPMASPTMHR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00806 302 CDD SANT 9 57 IPR001005 -
Accr12g00806 302 Gene3D - 1 70 - -
Accr12g00806 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Accr12g00806 302 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Accr12g00806 302 FunFam transcription factor MYB1R1 138 189 - -
Accr12g00806 302 SUPERFAMILY Homeodomain-like 134 189 IPR009057 -
Accr12g00806 302 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Accr12g00806 302 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Accr12g00806 302 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Accr12g00806 302 FunFam Transcription factor SRM1 1 70 - -
Accr12g00806 302 CDD SANT 139 184 IPR001005 -
Accr12g00806 302 ProSiteProfiles SANT domain profile. 4 61 IPR017884 -
Accr12g00806 302 MobiDBLite consensus disorder prediction 71 139 - -
Accr12g00806 302 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Accr12g00806 302 PANTHER TRANSCRIPTION FACTOR KUA1 5 297 - -
Accr12g00806 302 Gene3D - 138 190 - -
Accr12g00806 302 SMART sant 5 59 IPR001005 -
Accr12g00806 302 SMART sant 136 186 IPR001005 -
Accr12g00806 302 MobiDBLite consensus disorder prediction 77 126 - -
Accr12g00806 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 136 186 IPR006447 GO:0003677
Accr12g00806 302 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00806 Accr-Chr12 8114976 8116112 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00806 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00806 - - pcin:129320426 498.049