Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00791 ATGTCCACTGGAAGACGCAGCTTGAAGCGCAATCGCAAACAAAAATTCGTGGAAGAAGGAGCAGTTCATCCGACGACCGATTGTAAAGTGTTGGCACTTGAACCTCAACAGTCTCTTCAAGATCTCTTGACTGAAGTTGTGGCGCAAGTCACTATTCTCAACTCCAGTTTATCATCGTCTGAGTCGGATCGCCTCGCGGCCAAGCGCGCTGCTCATCTTCTCTCTGAACTCGCTAAGAATGCGTTAATTGTGGACACTATAGTGGAGTGCGGAGCCGTTCCTTCCTTATTAAAACATCTGAAAGTTCCAGAACCAGGTGTTACCAAGCCTTACGAGCATGAGGTCGAATGGGGATGTGTCTGTGTCCTTGCCCTTCTTGCTTACAAACCACAGCACCAACAACTCATTGTGGATGCTGGAGCTTTGGCATATCTTATGGATTTGTTGAAGAGGCACAAGACCTATGTCAATTCACCAGCACTTACTGAACTTCTAAGGAGTGCAGCTAACGCCATTAAAAACCTTGCGGCCGGAAATAGCAGCATTCAAACCCGTGTTGGGACGGAAGGCGGCATCCCTCCTCTTGTTGAATTGTTTGAATTTGATGATGCAACGCTACAATGTGCAGCTACAGGAGCTTTAGGTAGTCTTGCATTTAAAAATGATGAGAACAAAAACCAGATTCTCAAATTGAATGTACTGCCTACGCTTGTACTAATGCTTGGAGCAGAGGATGCTACAATACATTGTGAAGCAGTTACCGCAATTTCAAATCTGGCCAATTATTCTCCACACATGACAACAGAAGTTCTTCTAGCTGGTGCTCTGCAACCGGTAATTATATTGCTTAGATCTTGCTGTTCCACGAGTCAAAGAAAAGCAGCTCGTTTAATTGGTATATTTGCAAAGACAAATTCTGATTGCAAGGTTCAGATTGCTCAAAGAGGGGCTATCGCGCCGCTTATTGACATGCTTAACTCTCCACATGCAGAGCTTCAGGAAGTGTCAGCTTTTGCAATTGCAATACTTGTGGAGGACCCACACAATCAAGTTGGTGTTGCTTATACTGGAGGTATAAAACCTTTACTCAACCTTCTTTCCTCCAAGAGTACAACTCTCCAACTTCATGCAACCTATTCTGTGTACCTTCTTGCCAAAAATGAGGATACTGTTGCGGATATTGTTAAGTTTGGCGGTGTTCAAAAACTATTGGATGGAGATTTCACGGTTGAATCTGCTAAAAAGTTTGTAGGAAGTACAATGGAATTATTACAGGAAAAAATGCATGGACGGGTGCTGAAACAACTGTTGTATCTTATGCGTTTCAGAAAAAAGGTTGTTCAAAGGAATGTGGCTCTGGCTCTTGCTCATTTATGTTCCCCTGATGATCAGAAATTTATTTTTGTGGACAACAATGGACTTGCCTTGCTGCTTGAGCTTCTAACATCGAGAAACCTCAACAAAAAACGCGAGGCTTCAATGGCACTTTACTCTTTGATTATCAGAACCACATCTATCCCTCCCTTAGATACTACTCCTTCATCCACGACTCCTCAGGTGTACTTATGCGAGCAATATGTAAACAATCCTTCTCTTTCTGATGTCACCTTTTTAGTTGAAGGAAAACGGTTCTATGCTCACCGGATTTGTTTGCTTGCTTCCTCTGATGCGTTTCGAGCAATGCTTGATGGTGTTTATCGGGAGAAGGAAGCAAAATATATACCGATTCCAAACATTAAATGGGCTGCCTTTGAATTGATGATGAGATTTATTTATACAGGAACTGTAGATGTCAATTTGGATCTTGCTCAGGATCTCCTGAGAGCTGCTGATCAGTATCTTCTAGATGGTCTTAAGCGATCCTGTGAATGTGTAATAGCTCAGGATATTTCCTTGGGAAATGTTTCTCAATTGTATGAGTTATCAGAGTCAATGAATGCTATGTCATTGAGGCGAGCATGTATATTGTTTCTGTTGGAGCAATTTGACAAATTGAGTGTGAAACCATGGTATAGCCGCCTGATGCGTCGCATTGCCCCAGATGTAATCGAAATTTTCAGAGGCTTTCTTGTTAGTGGAATAGATAAGAAATAA 2094 0.4236 MSTGRRSLKRNRKQKFVEEGAVHPTTDCKVLALEPQQSLQDLLTEVVAQVTILNSSLSSSESDRLAAKRAAHLLSELAKNALIVDTIVECGAVPSLLKHLKVPEPGVTKPYEHEVEWGCVCVLALLAYKPQHQQLIVDAGALAYLMDLLKRHKTYVNSPALTELLRSAANAIKNLAAGNSSIQTRVGTEGGIPPLVELFEFDDATLQCAATGALGSLAFKNDENKNQILKLNVLPTLVLMLGAEDATIHCEAVTAISNLANYSPHMTTEVLLAGALQPVIILLRSCCSTSQRKAARLIGIFAKTNSDCKVQIAQRGAIAPLIDMLNSPHAELQEVSAFAIAILVEDPHNQVGVAYTGGIKPLLNLLSSKSTTLQLHATYSVYLLAKNEDTVADIVKFGGVQKLLDGDFTVESAKKFVGSTMELLQEKMHGRVLKQLLYLMRFRKKVVQRNVALALAHLCSPDDQKFIFVDNNGLALLLELLTSRNLNKKREASMALYSLIIRTTSIPPLDTTPSSTTPQVYLCEQYVNNPSLSDVTFLVEGKRFYAHRICLLASSDAFRAMLDGVYREKEAKYIPIPNIKWAAFELMMRFIYTGTVDVNLDLAQDLLRAADQYLLDGLKRSCECVIAQDISLGNVSQLYELSESMNAMSLRRACILFLLEQFDKLSVKPWYSRLMRRIAPDVIEIFRGFLVSGIDKK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00791 697 ProSiteProfiles BTB domain profile. 533 600 IPR000210 GO:0005515
Accr12g00791 697 Pfam BTB/POZ domain 525 627 IPR000210 GO:0005515
Accr12g00791 697 Gene3D - 33 200 IPR011989 -
Accr12g00791 697 SUPERFAMILY ARM repeat 55 404 IPR016024 -
Accr12g00791 697 SMART BTB_4 533 630 IPR000210 GO:0005515
Accr12g00791 697 Gene3D Potassium Channel Kv1.1; Chain A 523 667 IPR011333 -
Accr12g00791 697 Pfam Armadillo/beta-catenin-like repeat 189 218 IPR000225 GO:0005515
Accr12g00791 697 Pfam Armadillo/beta-catenin-like repeat 221 260 IPR000225 GO:0005515
Accr12g00791 697 SMART arm_5 80 128 IPR000225 GO:0005515
Accr12g00791 697 SMART arm_5 129 177 IPR000225 GO:0005515
Accr12g00791 697 SMART arm_5 346 386 IPR000225 GO:0005515
Accr12g00791 697 SMART arm_5 179 219 IPR000225 GO:0005515
Accr12g00791 697 SMART arm_5 461 501 IPR000225 GO:0005515
Accr12g00791 697 SMART arm_5 305 345 IPR000225 GO:0005515
Accr12g00791 697 SMART arm_5 221 261 IPR000225 GO:0005515
Accr12g00791 697 SMART arm_5 263 303 IPR000225 GO:0005515
Accr12g00791 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 190 225 IPR000225 GO:0005515
Accr12g00791 697 SUPERFAMILY ARM repeat 357 501 IPR016024 -
Accr12g00791 697 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 689 IPR044282 -
Accr12g00791 697 Gene3D - 201 510 IPR011989 -
Accr12g00791 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 140 190 IPR000225 GO:0005515
Accr12g00791 697 SUPERFAMILY POZ domain 524 626 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00791 Accr-Chr12 7838632 7843675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00791 283 520 U-box Gene Family AT2G23140 24.609 1.98e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr12g00791 BTB 4e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00791 - - aew:130750903 782.326