Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00779 ATGAAGGCAACCAAATTATATGAGCAGAGAACCATCACAAGCAAGCTTGTGAGAAATTTTTGCTTTTCCGGTGTCACACCAAGAGTCGTTCGGATTTCCGTCTCCGACAACTATGCTACTGATTCTTCCAGTGACGAAGAAGATGAGAGAGGAGCACAATTTTCTCGCCCAGTGAAGAAGTTCATCCATGAGATCAGAATCGAAGACTTGTCAAGTTTCAGAGCTAATAGCAGGGAAGTTAACGGGAATTGCAGGACCGTTTTGAAGAAGAAGAAGAGGGAAAGGCCACCTGCAAGAATGGCCAGGAGGAAACAGAGCCTCCACGACGGGAAGAAATTTCGCGGTGTTCGGCAGCGACTGTGGGACCGGTGGGCGGCGGAGATCCAAGACCCAATTCTGAGAGCTCGGAAGTGGCTCGGCACATTTGACACGGCGGAGGAAGCGGCACTTGTGTACGACATAGAAGTGAAGGAGAAGGATGATCGAGCAAAATCATCTGGTGGATCCAGTGCGTTACGCTCAAAGCTTCTCCTTGGGGCGTTCTAA 546 0.4963 MKATKLYEQRTITSKLVRNFCFSGVTPRVVRISVSDNYATDSSSDEEDERGAQFSRPVKKFIHEIRIEDLSSFRANSREVNGNCRTVLKKKKRERPPARMARRKQSLHDGKKFRGVRQRLWDRWAAEIQDPILRARKWLGTFDTAEEAALVYDIEVKEKDDRAKSSGGSSALRSKLLLGAF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00779 181 Gene3D AP2/ERF domain 111 164 IPR036955 GO:0003700|GO:0006355
Accr12g00779 181 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Accr12g00779 181 Pfam AP2 domain 112 153 IPR001471 GO:0003700|GO:0006355
Accr12g00779 181 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Accr12g00779 181 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Accr12g00779 181 CDD AP2 111 153 IPR001471 GO:0003700|GO:0006355
Accr12g00779 181 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 153 - -
Accr12g00779 181 SMART rav1_2 112 165 IPR001471 GO:0003700|GO:0006355
Accr12g00779 181 SUPERFAMILY DNA-binding domain 112 157 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00779 Accr-Chr12 7609019 7609564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00779 27 153 AP2-EREBP Transcription Factor Family AT4G11140 44.361 3.80e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr12g00779 AP2 1.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00779 - - pcin:129289381 212.231