Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00761 ATGTCGATTGTTCCGAGCTCCCCTAATAAGAGACTCAGAACCCAAGACCAGGAGGATTCCGATGATAACCATCACCTACCACCTTCAGTCGAGGACGACCAGCCTGATTCTTGTGGAATTTGCTACAACGACCATGGCTCTTCGATTAGAGGTGAAATTGATTGTTGCAATCACTTTTTTTGCTTCGTCTGCATCATGGAATGGTCCAAGCATGAGTCCCGATGCCCCCTCTGTCGTCAAAGATTCTCCACCGTTCGCCGCCCCCCTAAGCCCGGCGTCTTCCCTTCCTCGCGTCTCGTTAAAGTCCCAATTCGTGACCAGGTCTGCCACGTTCATGGAAATATCACAACAGGTCCTGCGGATCGTTATGCTGAAACTAGGTGTAGTGTCTGTAATGGTGGGGAAGATGAAAGTTATCTTCTACTATGTGATCTTTGTGATACCGCTTCTCATACATATTGTGTTGGCCTTGGATATGTTGTGCCTGAAGGTGATTGGTTTTGCCAAGATTGTACTGTTTCCAGGTCAATTAATGACAATCACAATGTAGACCATCAACGTGACATACCCACAGCTGAATCAAGTGTAACAATCCTTGATATTGTGAGAGAACCAGACAGCCAGATGGTCCAAAGATCAAGACCGTCTCCCCTTGTTAGCCCTCTACCTGATAGGGTCAGTAGAAGCAAAGAAAGGAATCGTGACGTAAGTGTTACCCCTTTACCTGAGAGGGTGAATAGAAACGAAGATAGAAATCGTGACATAAGTGCTCGGACATTGCGCAAATGTCGTAATGTGCAACGTAATATACAAGCTTTGCGTCAAAATTGGAATGCCTTGAGAAATGGCTCATTAAGGTTCTCTTCAGCTCCTTCTGAATCTGTTGTCAGGCATGATACACAACAGAACACTGATTCCTTACCTCGTGGAAAGTCAGATCAACTGCATTCTTCAGCTTCCACAAGCCCTCATCAATCCATAATTCAAAGTGGCCCTTCTAATAACAAATTGGATGAGAGTGGCTCAAAGGATGTGAACAAGGCTTGGAAAATGCTGGATAGAGCAAGGATGATGGAAAAGACTAATAATAATAAGGGCAGCATCCTTCCACAGGGATTAGGTCACCCTTCAACAGTTGTAGGACCTAGAAAAGCACCAGGAATTCATTGTAATGAACAAGGATTGAAGATTCATCAATCAGGAAGATCCACAGGAAATGAGAAGCCATACAGCTTTTCTAGTTTCAATAAGGATATGAACAATTGCCGGCCTCTAGAGTCGGGAGGGAAAAAGCATAGCGGGGTCGCACATAAGGTGACAACACCAAATATTAGGGACCAAGCTTCTCATTTAGAAGAATGCTGTGAACCTTCATTGCCTAGTAAAATGCCAAGTAGCATTCTATGTGTTCCCAGACGTGAAAATGGGGAGAGAAATTTTGCTAAGGAACAAAGCAGGTCTTCTTGTTTAGTAACTTCAGTGGGTTCTGCTCCTTCTGATGGCAAGATTGGAAGTTTGTCTTCCTCAAGCAGGGATGAAGGTGAGAAAAAACGATTGTCTAAAAATTTTGGGCATACAAACACTCAAGACAGTGAAGATGCTAAAAATGAGATCAAGTCTCTTGTCAAGCTCAATCTGAAAATCCTCAGTAAAGATAAACAACTAGGTGTTGATGCATTCAAGGAAATTGCTAGGCACTCGACCCACGCTATCTTAGCTGCCTGTCAATCGGAGCATGGAAAGCTGGGGGCAAGCTCGTCGAGCTCTTTATGCAGTCACGGGGGCGATCATGAGCATTCGCACAAGTCCACCTTAATGCCTAATTGTTGCCGACAATGTTTTTACATGTTTGTCAAGAATGCCGTCAGCTCCACTATGATGCAGAAGGTGGGTGGGGGTGGATCTTCATCATCTTCCTGA 1920 0.4448 MSIVPSSPNKRLRTQDQEDSDDNHHLPPSVEDDQPDSCGICYNDHGSSIRGEIDCCNHFFCFVCIMEWSKHESRCPLCRQRFSTVRRPPKPGVFPSSRLVKVPIRDQVCHVHGNITTGPADRYAETRCSVCNGGEDESYLLLCDLCDTASHTYCVGLGYVVPEGDWFCQDCTVSRSINDNHNVDHQRDIPTAESSVTILDIVREPDSQMVQRSRPSPLVSPLPDRVSRSKERNRDVSVTPLPERVNRNEDRNRDISARTLRKCRNVQRNIQALRQNWNALRNGSLRFSSAPSESVVRHDTQQNTDSLPRGKSDQLHSSASTSPHQSIIQSGPSNNKLDESGSKDVNKAWKMLDRARMMEKTNNNKGSILPQGLGHPSTVVGPRKAPGIHCNEQGLKIHQSGRSTGNEKPYSFSSFNKDMNNCRPLESGGKKHSGVAHKVTTPNIRDQASHLEECCEPSLPSKMPSSILCVPRRENGERNFAKEQSRSSCLVTSVGSAPSDGKIGSLSSSSRDEGEKKRLSKNFGHTNTQDSEDAKNEIKSLVKLNLKILSKDKQLGVDAFKEIARHSTHAILAACQSEHGKLGASSSSSLCSHGGDHEHSHKSTLMPNCCRQCFYMFVKNAVSSTMMQKVGGGGSSSSS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00761 639 Pfam PHD-finger 127 173 IPR019787 -
Accr12g00761 639 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Accr12g00761 639 SUPERFAMILY FYVE/PHD zinc finger 121 175 IPR011011 -
Accr12g00761 639 PANTHER F18C1.6 PROTEIN 23 629 - -
Accr12g00761 639 MobiDBLite consensus disorder prediction 509 533 - -
Accr12g00761 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 97 IPR013083 -
Accr12g00761 639 MobiDBLite consensus disorder prediction 225 253 - -
Accr12g00761 639 MobiDBLite consensus disorder prediction 288 343 - -
Accr12g00761 639 ProSiteProfiles Zinc finger RING-type profile. 38 79 IPR001841 -
Accr12g00761 639 Coils Coil 256 276 - -
Accr12g00761 639 SMART ring_2 38 78 IPR001841 -
Accr12g00761 639 MobiDBLite consensus disorder prediction 491 508 - -
Accr12g00761 639 MobiDBLite consensus disorder prediction 1 33 - -
Accr12g00761 639 ProSiteProfiles Zinc finger PHD-type profile. 125 174 IPR019787 -
Accr12g00761 639 Pfam Ring finger domain 36 79 IPR001841 -
Accr12g00761 639 MobiDBLite consensus disorder prediction 288 339 - -
Accr12g00761 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 186 IPR013083 -
Accr12g00761 639 MobiDBLite consensus disorder prediction 12 31 - -
Accr12g00761 639 MobiDBLite consensus disorder prediction 491 533 - -
Accr12g00761 639 SMART PHD_3 127 172 IPR001965 -
Accr12g00761 639 MobiDBLite consensus disorder prediction 204 253 - -
Accr12g00761 639 SUPERFAMILY RING/U-box 37 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00761 Accr-Chr12 7416041 7418473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00761 100 177 C2H2 Transcription Factor Family AT3G01460 34.177 1.19e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr12g00761 PHD 9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00761 - - pcin:129296896 871.692