Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00753 ATGGGGAGGGGAAGAGTACAGCTAAAGAGGATCGAGAACAAGATCAACAGACAAGTGACTTTCTCAAAGAGGAGGTCTGGTTTGCAGAAGAAAGCCCATGAAATCTCTGTCCTTTGCGATGCCGAGGTTGCTCTCATCGTCTTCTCCACCAAGGGCAAGCTCTCTCACTACTCCAGCGACCCCTGCATGGAAAAAATTATTGAACGCTATGAGAGGTATTCATATGCAGAAAGGCCGCAAGCTGCACCTGATCGTTCACCAACTGAAAACTGGACTCTAGAGCACGCAAAGCTTAAGGCTAGGATGGAGGTCCTGCAAAGAAATCAAAAGCATTACAGGGGAGAAGATCTGGAAGGCCTAAGTCTCAAAGAGCTTCAGAATTTGGAGCATCAACTAGACAGTGCTCTCAAACACGTCAGATCGCGCAAGAACCAACTCATGTATGAATCAATTTCTGAGTATCAGAAAAAGGATAAGAAGCTGCAGGAACAAAACAACTTGCTGGCTAAGGAGATAAAAGAGAAAGAGAAGGCCTTGGCCCAAAAGGCACGTGAGGAAAAGCACAATGATGAGGTAAATGATGATGATGCCCACGTACAACCACATTTACCACCCTCCAATATTGGAGAGCCCGTAGAAGCAAGGGGTGGTGCAGAAGATGACGAAGCAACGACGACTCATCAGCCTCGATCTGGCCCGTTGCTTCCCTCATGGATGCTTCATCAGTGA 729 0.4719 MGRGRVQLKRIENKINRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGKLSHYSSDPCMEKIIERYERYSYAERPQAAPDRSPTENWTLEHAKLKARMEVLQRNQKHYRGEDLEGLSLKELQNLEHQLDSALKHVRSRKNQLMYESISEYQKKDKKLQEQNNLLAKEIKEKEKALAQKAREEKHNDEVNDDDAHVQPHLPPSNIGEPVEARGGAEDDEATTTHQPRSGPLLPSWMLHQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00753 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Accr12g00753 242 Coils Coil 125 145 - -
Accr12g00753 242 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Accr12g00753 242 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Accr12g00753 242 Coils Coil 88 115 - -
Accr12g00753 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr12g00753 242 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr12g00753 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr12g00753 242 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr12g00753 242 Coils Coil 151 195 - -
Accr12g00753 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Accr12g00753 242 MobiDBLite consensus disorder prediction 178 198 - -
Accr12g00753 242 MobiDBLite consensus disorder prediction 178 242 - -
Accr12g00753 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr12g00753 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr12g00753 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr12g00753 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr12g00753 242 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Accr12g00753 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00753 Accr-Chr12 7323838 7330176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00753 1 225 MADS-box Gene Family AT1G26310 57.759 1.75e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr12g00753 K-box 9.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00753 K09264 - gmx:100816836 322.783