Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00738 ATGGCAGAATTAGTTACCTCAGATGCGATTTCGATACTGCTTGCCAACCCCTCACCAGATTCTTCCTCGGAGCTTCCTGAGATCATCGTCCAAATTCTGGATCTCAAGCAAAGCGGTAACAGATTCATGTTCACTGCTAGCGATGGAAAGATGAAGTTACGAGCAATCCTCCCTTCTAATCAGAATTCCCAAGTCATTTCTGGAAGTATTCAGAATCTGGGTCTTATCCGCATTGTTGATTATACTCTCAATGATATCCCAAATAAGTCAGAGAAATATCTTATTGTTACAAAATGTGAATCGGTCTCTCCTGCTCTTGAAATGGAGATAAAAACAGAAGTCAAGAGTGAGTGCCCCGCTATGCTTTTGAATCCAAAGCAAGAGGGTGAAATCAAAAGCGAGGTGAAAAGTGAAGCTGCTGGAATTATTTTGAAACCAAAGAAAGAAATGGTGTCAAAATCTGCCGCTCAGATTTTACACGAACAACATACAAACACTGCCCCTACTGCACGAATGGCCATGACACGCAGGGTGCGCCCTCTTGTTTCCTTAAATCCTTATCAGGGTAATTGGACGATAAAGGTTCGTGTAACAAACAAAGGTAACATGCGCTCCTACAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAACGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAGGCTGCCAGGAAATTTTATGACAGATTTGCGCTTGGGAAGGTCTACTACATATCCAAGGGAACTTTAAAGGTTGCTAACAAACAGTTCAAAACTGTCCAAAACGATTACGAGATGACATTGAATGAGAATTCTGAGGTGGAAGAGGCAGCCAATGAAGAAAGTTTTGTTCCAGAAACAAAATTTAACTTTGTCCTGATTGATCAGCTCGGTCCTTTTGTCAATAGGAGTGACCTTGTTGATGTCATAGGAGTTGTTCAGAACGTGTCCTCCACCATGAGCATTCGAAGGAAGAGCAACGATGAGACGATTTCAAAGCGTGATATTACTATTGCTGACGACACAAAGAAGACAGTGGTTGTGTCTTTGTGGAGTGAACTTGCAACTAGTGTAGGGCAAGAATTGCTGGACAATGCTGATAAATTTCCAATTGTTGCAATCAAGTCTCTCAGGGTTGGGGATTTTCAGGGTGTTTCTTTATCAACCATAAGCAGAAGTGTAGTTCTGATAAATCCTGATATACCTGAAGCAAATAAGCTTAGATGCTGGTATGAGTCTGAAGGTAAAGACGCTCCAATGGCTTCCATTGGCTCTGGTGCATCTGTTGCCAAAAATGGAATGAGATCGGTGTACTCTGACCGTATTTCACTAGCTCAAATAACCTCAAACAAATCCTTAGGAGAGGACAAGCCTGCATTTTTCAGCATCAGGGCACATATAAGCTCCATTAGGCCTGATCAGACAATGTGGTATAGAGCTTGTACAACTTGCAACAAGAAAGCCACTGAAGCCATTGGGTCTGGCTATTGGTGTGAAGGCTGTCAGAAAAATGTTGAAAGCACTTTAAGGTATATTTTGGTTGCAAGGGTTTCTGATGCAAGTGGTGAAGCTTATGTGTCGATCTTCAATAATGAAGCTGAGGAGATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCACAGGAGGGAGAAGATAATCCATACCAAATGAAATTGAAACAAGCGACTTGGACCCCTCATCTATTCCGTGTTAGTGTTTCCCAGAATGAGTATATGAACGAGAAGAGGCAGAGGATAACTGTCCGAGTTGTTGCTCCAGTTGATTATGCTGCTGAGTCAAGAATTCTCCTGGAAGAGATTTCAAAGATGACAGCCTCACGATAA 1872 0.4199 MAELVTSDAISILLANPSPDSSSELPEIIVQILDLKQSGNRFMFTASDGKMKLRAILPSNQNSQVISGSIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCESVSPALEMEIKTEVKSECPAMLLNPKQEGEIKSEVKSEAAGIILKPKKEMVSKSAAQILHEQHTNTAPTARMAMTRRVRPLVSLNPYQGNWTIKVRVTNKGNMRSYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDRFALGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEESFVPETKFNFVLIDQLGPFVNRSDLVDVIGVVQNVSSTMSIRRKSNDETISKRDITIADDTKKTVVVSLWSELATSVGQELLDNADKFPIVAIKSLRVGDFQGVSLSTISRSVVLINPDIPEANKLRCWYESEGKDAPMASIGSGASVAKNGMRSVYSDRISLAQITSNKSLGEDKPAFFSIRAHISSIRPDQTMWYRACTTCNKKATEAIGSGYWCEGCQKNVESTLRYILVARVSDASGEAYVSIFNNEAEEIVGCSANELDSLKSQEGEDNPYQMKLKQATWTPHLFRVSVSQNEYMNEKRQRITVRVVAPVDYAAESRILLEEISKMTASR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00738 623 CDD RPA1_DBD_A 180 283 - -
Accr12g00738 623 FunFam Replication protein A subunit 290 429 - -
Accr12g00738 623 CDD RPA1_DBD_B 313 419 - -
Accr12g00738 623 FunFam Replication protein A subunit 433 619 - -
Accr12g00738 623 FunFam Replication protein A subunit 177 286 - -
Accr12g00738 623 Gene3D - 5 112 IPR012340 -
Accr12g00738 623 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Accr12g00738 623 SUPERFAMILY Nucleic acid-binding proteins 5 108 IPR012340 -
Accr12g00738 623 CDD RPA1_DBD_C 451 618 IPR047192 -
Accr12g00738 623 Gene3D - 291 430 IPR012340 -
Accr12g00738 623 PANTHER REPLICATION FACTOR A 1, RFA1 191 582 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Accr12g00738 623 NCBIfam replication factor-a protein 1 (rpa1) 7 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Accr12g00738 623 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Accr12g00738 623 Gene3D - 177 286 IPR012340 -
Accr12g00738 623 Gene3D - 431 619 IPR012340 -
Accr12g00738 623 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Accr12g00738 623 Pfam Replication factor-A C terminal domain 467 611 IPR013955 -
Accr12g00738 623 FunFam Replication protein A subunit 4 114 - -
Accr12g00738 623 SUPERFAMILY Nucleic acid-binding proteins 446 619 IPR012340 -
Accr12g00738 623 Pfam Replication protein A OB domain 309 405 IPR031657 -
Accr12g00738 623 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00738 Accr-Chr12 7165713 7169005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00738 1 623 Core DNA Replication Machinery Family AT5G08020 66.933 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00738 K07466 - qsa:O6P43_002222 975.311