Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00733 ATGGTTTTCTTTGGTAGAGTTGGGAATATACTAAGACAGGCTGCGAATAAGCAGCTCAGTCCGGAATTACGTTCAGCTCCATCTATTTTCCAGGCTATACGATGCATGTCATCTGCTGCAAATTCAAGGGTGTTTGTAGGAGGACTGTCATATTCTACTGATGAGCAAAGTTTGAGGGAAACTTTTGAGAAATATGGTCAAGTAGTTGATGCAAGGGTAATTATGGATCGTGACTCTGGAAGATCTAGAGGATTTGCCTTTGTCACATTCACATCAGTTGAGGAGGCATCAAGTGCTATTCAGGCCTTAGATGGGCAGGATCTTCATGGTCGCCAAGTTCGGGTAAATTATGCTAATGAAAGGCCTCGATATGGCGGCGGCGGCGGTTTTGGTGGTTCTTATGGCAGTGCTCCATATGGTGCTGGTGCTGGTGCTGGCGCTGGCTATGGAGGTGGTCATGGTAACCCTCCCTATGGTGGTTCTGGTGCATATGGTGGCAATGCTGCTGGAGGTTATGGTGGTGGTGGATATGGTGGAGGAAGCTATGGACCAAGTGGCGATTTTGGTGGCAGCACTGGCAATAACTATGCTTCTAACAATTTTGGAGCTGGGGCTGCAGGTGGCAGTTTTGGAAATGATGGTAACTTTGCAAGTGGAAGCCCTTATGCTGGTGGAAGTGGTGGAGGATATGGTGGTAACAGTGGAAGTGGAGCTGCTGCTGACAGCTTTGGAACCGGAAGTGCTGGTGGTGGCTTTGGCGGTACCAATTATGCAAATGATGGGAACTTTGCAAGCGGAAGCACTCATGCTGGTGGCAGCAGTGGGGGCTTTGGTGGTGATAGTGGAAACTTTGCGGGTGGAAGCACTTATTCTGGTGGCAGCAGTGGAAACTTTGGTGTTTCTGGTGGTCGTGGAAGTAGGGATGACTATGGAAGTGCCTCTAGTTTTGGCGGTGCTGCTGCAAGTGATGGCAGTGATAGCTTTGGCAGTGCTGCTGGATTTGGCAGCAGTGGCAACTTTGGCAGTTCGGCTGGGTTTGGCAGCATTGGCAACTTTGGCAGTTCGGCTGATTTTGGTAGCAGCGGTGGCCCAAGTTCAGCCAGCGACTTTGCTGGTGGATATGGAGACATAGGCAGCAGTGGTCAATTGGATGGCAAAGAAATTGACAAAATAGGTCAGGATGTTGGAGATTTGGGGACAATAGAGGAAAGCTTCCGGGACGATGCTGATGCTGATACTAGTGATTTTGCCAAAAGAGCTTGA 1263 0.4933 MVFFGRVGNILRQAANKQLSPELRSAPSIFQAIRCMSSAANSRVFVGGLSYSTDEQSLRETFEKYGQVVDARVIMDRDSGRSRGFAFVTFTSVEEASSAIQALDGQDLHGRQVRVNYANERPRYGGGGGFGGSYGSAPYGAGAGAGAGYGGGHGNPPYGGSGAYGGNAAGGYGGGGYGGGSYGPSGDFGGSTGNNYASNNFGAGAAGGSFGNDGNFASGSPYAGGSGGGYGGNSGSGAAADSFGTGSAGGGFGGTNYANDGNFASGSTHAGGSSGGFGGDSGNFAGGSTYSGGSSGNFGVSGGRGSRDDYGSASSFGGAAASDGSDSFGSAAGFGSSGNFGSSAGFGSIGNFGSSADFGSSGGPSSASDFAGGYGDIGSSGQLDGKEIDKIGQDVGDLGTIEESFRDDADADTSDFAKRA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00733 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Accr12g00733 420 MobiDBLite consensus disorder prediction 357 420 - -
Accr12g00733 420 Gene3D - 12 136 IPR012677 -
Accr12g00733 420 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 194 - -
Accr12g00733 420 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Accr12g00733 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Accr12g00733 420 SMART rrm1_1 43 116 IPR000504 GO:0003723
Accr12g00733 420 CDD RRM2_NsCP33_like 43 118 - -
Accr12g00733 420 SMART rrm2_1 43 116 IPR003954 GO:0003676
Accr12g00733 420 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00733 Accr-Chr12 7106664 7108532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00733 40 122 C2H2 Transcription Factor Family AT2G19380 33.735 2.90e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00733 K12741 - gmx:100799124 201.445