Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00715 ATGGAAGAAGAAAAAGGTCGACAAGTGTTGAAACATGTGTGTAAATTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCTTTAGGAGGTCACATGAGGTCACACATCACCAATAATAATGTTTCAGCTCAAGAAGCAGAGGACAATAATACACTCACGACGGCAACGAAGAAGATTCAATCCGCCGTCATCAATGGCGGAGCTGGTGAAAGCAGCAGTAAGGTCGTGGGAGAGTACGATCTCAGAGAGAATCCCAAAAAGACTTGGAGATTCGCAGATTCAAGAAGCAAAGAAGAAGAAACAACACCACTACTAGTCACTGAGGACAAATTCTGCAAAGAGTGTGGTAAAGCCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAATGCCATTCTGGCAAATCTTCCATTAACAACAACAGCTTGGAGAATCAAGATTCTGTTGCTGCTGGCGATAAAGTCGTTACTGATAGCCAATCAGACAACGAAGGAACTGGCAATAATAATAATAATCCCAGCCGAAAAAGAAGATCCAAGAGAAGAAGAACCAGGTTTGTGATGACCCCTGCTTCAACTTCGTCTCTGTCTTTTGCAAATAATCATGCTTCGTCCTCTGTCTCTGAGGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGCTTAATGATGCTAAGTAGGGACGTGGGTCACTGGGGTGGTTTGAATTCTCTTGTTGAGTCCTCTGATAACAATTCTGCTTACTTCGAAGCTCGATCTTATGTGGTTCCAACTAATCGGAGCACCAAAAGTGAAACAGCTAAAGGGAAGAAACCAGTGAGCTTAGCAACGGTTTCCATTAATGAAACAGAACTAGATTCATCAGTGAAGTCAAATTGCAAGAAAGGCAAGTTCAAGTGTACTACCTGCAACAAGACATTTCATTCATACCAAGCTCTGGGAGGCCATAGATCTAGTCATAAGAAGCTCAAAGGAGGCTGCTTTGCTTCAAGGAACGATCAGAGCAGTGAAAACAGCATAGAAACAGACCTCAACAATGGGTATTATGTGATCGAAAAGCAACATCAAGAGCTTATTGGTTCTGTTAATTTTGAGAACGAGGAAGAGATGGTTAAGAAGAACAGAGTACACGAGTGTCCAATTTGCCTCAAGATTTTTCCAACTGGGCAAGCTTTGGGGGGTCACAAGAGATCTCATTTTGCAGCAGAAGGGTCACTAGTACTTGAGAAACCAGTCCAGGAAATCAGAGACTTTCTTGATCTTAATCTTCCAGCTTCTGCAGAAGAAGAGAGTAACAGTCAAGTAATGGAGAATTACCCACCATGGTGGCTGGTACAAGGCCATAATCATCATCACCATCCTAAGCAAGAGCCACTGGTTGGTCTCATATCTAACTGA 1392 0.4282 MEEEKGRQVLKHVCKFCSKSFPCGRSLGGHMRSHITNNNVSAQEAEDNNTLTTATKKIQSAVINGGAGESSSKVVGEYDLRENPKKTWRFADSRSKEEETTPLLVTEDKFCKECGKAFHSWKALFGHMKCHSGKSSINNNSLENQDSVAAGDKVVTDSQSDNEGTGNNNNNPSRKRRSKRRRTRFVMTPASTSSLSFANNHASSSVSEVEQEQEEVAMSLMMLSRDVGHWGGLNSLVESSDNNSAYFEARSYVVPTNRSTKSETAKGKKPVSLATVSINETELDSSVKSNCKKGKFKCTTCNKTFHSYQALGGHRSSHKKLKGGCFASRNDQSSENSIETDLNNGYYVIEKQHQELIGSVNFENEEEMVKKNRVHECPICLKIFPTGQALGGHKRSHFAAEGSLVLEKPVQEIRDFLDLNLPASAEEESNSQVMENYPPWWLVQGHNHHHHPKQEPLVGLISN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00715 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Accr12g00715 463 SUPERFAMILY beta-beta-alpha zinc fingers 11 38 IPR036236 -
Accr12g00715 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 375 402 IPR013087 -
Accr12g00715 463 Pfam C2H2-type zinc finger 296 320 - -
Accr12g00715 463 Pfam C2H2-type zinc finger 12 34 - -
Accr12g00715 463 Pfam C2H2-type zinc finger 374 397 - -
Accr12g00715 463 Pfam C2H2-type zinc finger 111 132 - -
Accr12g00715 463 Gene3D Classic Zinc Finger 293 397 - -
Accr12g00715 463 ProSitePatterns Zinc finger C2H2 type domain signature. 377 397 IPR013087 -
Accr12g00715 463 SUPERFAMILY beta-beta-alpha zinc fingers 296 397 IPR036236 -
Accr12g00715 463 ProSitePatterns Zinc finger C2H2 type domain signature. 298 318 IPR013087 -
Accr12g00715 463 MobiDBLite consensus disorder prediction 185 211 - -
Accr12g00715 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Accr12g00715 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 296 323 IPR013087 -
Accr12g00715 463 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Accr12g00715 463 MobiDBLite consensus disorder prediction 154 211 - -
Accr12g00715 463 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Accr12g00715 463 SMART c2h2final6 296 318 IPR013087 -
Accr12g00715 463 SMART c2h2final6 375 397 IPR013087 -
Accr12g00715 463 SMART c2h2final6 109 131 IPR013087 -
Accr12g00715 463 SMART c2h2final6 12 34 IPR013087 -
Accr12g00715 463 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 441 - -
Accr12g00715 463 SUPERFAMILY beta-beta-alpha zinc fingers 110 135 IPR036236 -
Accr12g00715 463 MobiDBLite consensus disorder prediction 154 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00715 Accr-Chr12 6788640 6790031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00715 370 427 C2H2 Transcription Factor Family AT1G26610 51.613 3.68e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr12g00715 zf-C2H2_6 1.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00715 - - vra:106757260 373.244