Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00714 ATGCACCCTCCGTCCCACACTACCCTCTTCTCCCATAAACCCTATCCTTCAGAATCATTCTTCTTAACCCATCATCAACCAACGATTCACTCCCTGCAATCGGATTCCCCTCTTCATACTCATCGATCCGACCCGACGAGAAGTTCGGCCTCTCCTTATGGGCTTCAATCAATTAATTCTCTGGACACGAACGCGGATTTTCAGAACTGGATCGTCAAACAAGTTCCCTCCGTAAGATACGAAGCTGCTGCCAAAGCTTCTCTTGGGACTTCGACTGTGTCCGCAGATTTCCCTTCTGTGTGGAATGGCATCTGGGGGCCTTATCTTTTGCCTACTCTTACCCCAGTAATATTGCCAATGCCAAACCAAACCAAAGCTAATGAACCAATGGGATGCGAGGTTTGCAAAATTGATTGCACTAGCAAAGATGCTTTTGAAAAGCACGTATCAGAAGAGAAGCACAAGAGAAATATGCAGTTGTTAAATAACCCCACCAATACAATAATACCAGGACCCTCTCGTGCTAGTTTAAAAAGTCAAATAAGTAGGTTAGGAGGACAAGATTTACTCGGTGTAGTGAATAAAGAGTTAGAATCTAAGAAGCAGAAGCTTGTGAAGGGCGGTGCAGCGGTTGATTCAGTAAGGGTTTGCACGATATGTAATGTCGCTTGCAATGGTCAAGATGGATATAACAAACATCTATCTGGGAAGAAGCATGCTGCTCAGATTAAGTTGATTTCTGATAATGGGATTGGTCCTTATATTGCTGCTTTCAAGGCTCATGGCATTGGTCCTTGGAAAAAAGGCCCAAAGAAAACTAAGTTTACCCAACCTGTATGGTGTGAAATCTGCAAGATTAGTTGTACCGGCAGGGATGCATATTTGACACACTTAGCTGGGAAGAAACACATGAGGAACTTAGAGTTGCTGTCAAAATCAAATAATGATTTGCAACTACAAATCAATCCAGTTATTGGTCCCCATGAAAAGCCAAACACTTGTAAAGCTGAAGGGATAGTTTCACATATGCCAAATAAAGCAGCCATGGTAGAGGATATTGAGGCAAAGAAACGTAAACTTGTGGAAGGTGGAGTAGCAGAAACTGATATTAGAATTTGCACTCTTTGTAATGTGGTGTGCAACAGCCAAACAGTGTTTTATTTTCACCTTAATGGGCAGAAACATGCTGATATGGTGAAGCTGAAGCAAGAGCAGGCAGGGTCAAATTAG 1230 0.4268 MHPPSHTTLFSHKPYPSESFFLTHHQPTIHSLQSDSPLHTHRSDPTRSSASPYGLQSINSLDTNADFQNWIVKQVPSVRYEAAAKASLGTSTVSADFPSVWNGIWGPYLLPTLTPVILPMPNQTKANEPMGCEVCKIDCTSKDAFEKHVSEEKHKRNMQLLNNPTNTIIPGPSRASLKSQISRLGGQDLLGVVNKELESKKQKLVKGGAAVDSVRVCTICNVACNGQDGYNKHLSGKKHAAQIKLISDNGIGPYIAAFKAHGIGPWKKGPKKTKFTQPVWCEICKISCTGRDAYLTHLAGKKHMRNLELLSKSNNDLQLQINPVIGPHEKPNTCKAEGIVSHMPNKAAMVEDIEAKKRKLVEGGVAETDIRICTLCNVVCNSQTVFYFHLNGQKHADMVKLKQEQAGSN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00714 409 SUPERFAMILY beta-beta-alpha zinc fingers 106 161 IPR036236 -
Accr12g00714 409 SUPERFAMILY beta-beta-alpha zinc fingers 272 310 IPR036236 -
Accr12g00714 409 PANTHER ZINC FINGER RNA-BINDING PROTEIN 196 329 - -
Accr12g00714 409 SUPERFAMILY beta-beta-alpha zinc fingers 369 402 IPR036236 -
Accr12g00714 409 SMART ZnF_U1_5 368 402 IPR003604 GO:0003676|GO:0008270
Accr12g00714 409 SMART ZnF_U1_5 276 310 IPR003604 GO:0003676|GO:0008270
Accr12g00714 409 SMART ZnF_U1_5 212 246 IPR003604 GO:0003676|GO:0008270
Accr12g00714 409 SMART ZnF_U1_5 127 161 IPR003604 GO:0003676|GO:0008270
Accr12g00714 409 MobiDBLite consensus disorder prediction 31 54 - -
Accr12g00714 409 Gene3D Classic Zinc Finger 120 160 - -
Accr12g00714 409 Gene3D Classic Zinc Finger 353 404 - -
Accr12g00714 409 Gene3D Classic Zinc Finger 267 309 - -
Accr12g00714 409 Gene3D Classic Zinc Finger 192 245 - -
Accr12g00714 409 SMART c2h2final6 371 395 IPR013087 -
Accr12g00714 409 SMART c2h2final6 130 154 IPR013087 -
Accr12g00714 409 SMART c2h2final6 279 303 IPR013087 -
Accr12g00714 409 SMART c2h2final6 215 239 IPR013087 -
Accr12g00714 409 Pfam Zinc-finger of C2H2 type 373 395 - -
Accr12g00714 409 Pfam Zinc-finger of C2H2 type 217 239 - -
Accr12g00714 409 Pfam Zinc-finger of C2H2 type 280 303 - -
Accr12g00714 409 Pfam Zinc-finger of C2H2 type 132 149 - -
Accr12g00714 409 SUPERFAMILY beta-beta-alpha zinc fingers 210 245 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00714 Accr-Chr12 6779251 6781845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00714 128 406 C2H2 Transcription Factor Family AT5G61190 25.806 1.90e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00714 - - aprc:113848135 389.808