Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00707 ATGGTACTCACGGAAGAACAAAGAAAACAAGCCGAAGCGAACCGATTAGCGGCCATTGAAAGACGAAAGGCAGTGTTAGAAGCTCGTGGAGAGAAAGGCCCTTGGCAGCTCTTCAAGTGCCGTAAGATCTCTTCCGAGTCTATTCCAAAGCCCACACCCACCGTTCACCAATCCCAGTCAGTCTCCGTTGATCCTGTTTCTGCAGCACCTCTGCCCCATAAATTTTTGGTTAGGCTAGAAATATGCTCTCCCGATTCCTTCTCTGCAACTCCTCTTCCCCTTCGAGGTTCCCCCTATCCCGGAGAAGAATGGTGCTTGCAGAGACTAAGTGATCATCTGTCCAATGTCATGCCTTCACACTACACCCAGAATCATGATGGAAGAAACGCCTGTGTGTATTACTTGAGGGATTACCATGCTGTCCTTAAATTTTTGAAAATTGTTACGGACATAGAAGTTGAAGATATTCCGCGGGCAACTTTGAAAGCCGTTGAAGCATTTTCACATTTCTCTGGTTCGGAGCGCTGGATACCCTGCAGGCCCGAGCATTTGTCTGATGACAAGGTTGATGAGTTAATTGGGAAGCTACCAAGGGCTCTGTTGGATGCGCTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTGGCCGGTGTCTTATTGCTGATGAAATGGGTCTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAATTAGAGCGGTGGCTTCCCTTTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTAACAAGATGCCCTAGAATTGTAGTTATTTCTTATACCATGCTTCATCGCTTGAGGAAGAGCATGTTTGAGCGAGAATGGGCTCTCTTGATTGTTGATGAATCTCATCATGTGCGATGTACGAGGAAAAGCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAAAAGTCAAGCGCATAATACTGCTATCTGGGACGCCTTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGCGAGAATAAATATGCGTTTGCTAAAACTTACTGTGACAGTAAATATATCAAGGGAAGCCATGGCAAAATCTTTGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGCTGCTACAATTACCCCCAAAACGGAGGCAAATTATAAGGTTGTTGTTGAAGAGATCAGATGTAGTTGCTGCAAAGATGGCAGTTGGAAAGTTGAATAGCAGTACTTCCAAAAGTGACACTAAAGACATGACTTTGGACAGTTCTGATGAACCTGATGGGAAGCTTTCCTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTCGTGAATGGCTTTCCCTCCATCCAGTCATTGCCGGGTCAGAAAATGCTTCGAAAATGATCATTTTTGCTCATCACCACAAAGTTCTTGACAGGGTGCAGGAGTTTGTATGTGAGAAAGGGATTAGTTTTATCCGAATTGATGGAAACACACTTGCTAGGGATAGGCAGTCAGCGGTTGTGTCATTTCGTTCAAGACCAGAGGTTAAAATTGCAATAATTGGTATTTTAGCAGCAGGATTTGGAGTTGATTTCTCAACAGCCCAAGATGTCGTGTTCTTGGAGCTTCCTCAGTGCCCAACCCTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGAGGGCAAACAAATGCAGTCAATGTATATATCTTTTGTGCAAAGGATACTTTGGACGAGTCACATTGGAAAAATCTGAACAAAAGTTTGCACCGTGTTTCATCTACAACAGATGGAAAATATGATGCAATGAAAGAGATACAGGTTGAAGGTGTTTCTTACTTGGACACATTCTTCAAGACCAAGAGAAACTATGAAGGGCAATCTGCATCTGATGAAACTTCAGAACAGGCGACCACATTGCCGGATTCTGCCTCAGTTTCAAATCTGCAACCTTCCCAAGCAAATTCCGAGGAATCAGAAGCAAAAATGGGTGATCAAGCTGATCAGCAGTCTTGCTTTGCTGACAAGGTTTCCTGCCCAGAATCAAGCGAGCCATCTATTTTGGATGTAGATTTAGATGTAGATGTTTTTGACACCAAGGAAAAATCCTCTGGTTTTGACATGAGTAAGCTGGACAAGAGTTATGGAAGCAATGATCAGATGATCAGTGATGAAGATGAAGATGATAATCAAGGAGAAGAGAATAAAAAATCATTAACAATGAAAACAGATGACTACCAACCTGTTCATCCAGTTGAAGCCGAAAAAAGTTCCTCTCCTCACATTGAATATCTACGATTTGAGGTGAGCCCATACACTGGAAGGGTCCACTTGTATACTTGCATTTTGGGTGCAGATACAAGACCAAGACCACTTTGTAAGAATTTTCGACCAGAGGAACTTGAGTTGCTCAGTTCCATTTCTGATGATGATAAGAAAAAGGAGACTATTGGGGACAATCCTGCTTTTGCAAATGCTCTTTTGGGATTTTTAAATGAATGGAAGAAGTTAAGGCCAATTGAGCGAAGGAAGTTACTAGGAAAGCCATTACAACTTCCCTTGGCCGTTGAATTGTGCTACTTGAGCGAAAGTAGTAGCCACGACAAGGGGGGATTATTAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAATGGAGATAAGCCATCCTTTACCATCAGGTGCTGTTTGGAGAAAGGTCTGTCTGCGAAGTGGCAATGGCAAGAAAGAGAGAGAATACACTCAAGGTTGGACTCTAACAAATGAGCCACTCTGTAAGCTTTGTCAAAAGACATGCATGAGTAACAATGCCAAGACACCTGAATACTTTGAAGATCTTTTCTGTAACCTAGTCTGCTATGAAGAATATCGCATGAGAACGAGCAACAAGTTCCTTCGTCAGGAACTTTTCGAAGTTGAACATGGGGTGTGCTCGAATTGTCATTTAGACTGTCATAAACTAGTTGCACATATAAAACCTTTGCCACTAGCTAGGCGACGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTAAGCGAAAAAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCGTGGCACGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGTCGACTCGAGAATATGAGGACTCTTTGCGTGGCCTGCCATTACGGTGTTACAACAACGCAGTGTGCTGAACGACGCAAAGAGAGGGCCAGGGCCAGGAAACAACTAAAATTAGTAATGAGTCAGTTAAAGGCAGGTCAAACAAAGGTCGGCACAGATTCTAACATTAAGGGGCAGGGTCTTGTTGAGGTACAAGAGGATGAAAATGAGGATGAGCTCATTGTAAAGGTGCCTGGAAGTGCTTATTCAGTAGCTAATGGCTAA 3555 0.4338 MVLTEEQRKQAEANRLAAIERRKAVLEARGEKGPWQLFKCRKISSESIPKPTPTVHQSQSVSVDPVSAAPLPHKFLVRLEICSPDSFSATPLPLRGSPYPGEEWCLQRLSDHLSNVMPSHYTQNHDGRNACVYYLRDYHAVLKFLKIVTDIEVEDIPRATLKAVEAFSHFSGSERWIPCRPEHLSDDKVDELIGKLPRALLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCLPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMFEREWALLIVDESHHVRCTRKSSEPGEIKAVLDVASKVKRIILLSGTPSLSRPYDIFHQINMLWPGLLGENKYAFAKTYCDSKYIKGSHGKIFADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVVAAKMAVGKLNSSTSKSDTKDMTLDSSDEPDGKLSYQELGIAKLSGFREWLSLHPVIAGSENASKMIIFAHHHKVLDRVQEFVCEKGISFIRIDGNTLARDRQSAVVSFRSRPEVKIAIIGILAAGFGVDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSSTTDGKYDAMKEIQVEGVSYLDTFFKTKRNYEGQSASDETSEQATTLPDSASVSNLQPSQANSEESEAKMGDQADQQSCFADKVSCPESSEPSILDVDLDVDVFDTKEKSSGFDMSKLDKSYGSNDQMISDEDEDDNQGEENKKSLTMKTDDYQPVHPVEAEKSSSPHIEYLRFEVSPYTGRVHLYTCILGADTRPRPLCKNFRPEELELLSSISDDDKKKETIGDNPAFANALLGFLNEWKKLRPIERRKLLGKPLQLPLAVELCYLSESSSHDKGGLLNGGSKRRMTPLMEISHPLPSGAVWRKVCLRSGNGKKEREYTQGWTLTNEPLCKLCQKTCMSNNAKTPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVEHGVCSNCHLDCHKLVAHIKPLPLARRREYIEKVAPNVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYGVTTTQCAERRKERARARKQLKLVMSQLKAGQTKVGTDSNIKGQGLVEVQEDENEDELIVKVPGSAYSVANG 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00707 1184 MobiDBLite consensus disorder prediction 678 722 - -
Accr12g00707 1184 Coils Coil 9 29 - -
Accr12g00707 1184 CDD HNHc 1075 1111 IPR003615 -
Accr12g00707 1184 CDD SF2_C_SNF 496 625 - -
Accr12g00707 1184 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1132 - -
Accr12g00707 1184 MobiDBLite consensus disorder prediction 760 797 - -
Accr12g00707 1184 Pfam Helicase conserved C-terminal domain 514 614 IPR001650 -
Accr12g00707 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 666 IPR027417 -
Accr12g00707 1184 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 377 IPR014001 -
Accr12g00707 1184 Gene3D - 429 706 IPR027417 -
Accr12g00707 1184 Pfam SNF2-related domain 222 452 IPR000330 GO:0005524|GO:0140658
Accr12g00707 1184 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 506 660 IPR001650 -
Accr12g00707 1184 CDD DEXHc_HARP_SMARCAL1 204 428 - -
Accr12g00707 1184 SMART helicmild6 531 614 IPR001650 -
Accr12g00707 1184 MobiDBLite consensus disorder prediction 678 713 - -
Accr12g00707 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 428 IPR027417 -
Accr12g00707 1184 SMART ultradead3 200 397 IPR014001 -
Accr12g00707 1184 Gene3D - 1006 1140 - -
Accr12g00707 1184 FunFam SNF2 DNA repair protein, putative 178 427 - -
Accr12g00707 1184 Gene3D - 182 424 IPR038718 -
Accr12g00707 1184 Pfam HNH endonuclease 1081 1111 IPR002711 GO:0003676|GO:0004519|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00707 Accr-Chr12 6708582 6720825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00707 519 667 RAD5 or RAD16-like Gene Family AT1G11100 33.775 2.15e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr12g00707 SNF2_N 3.5e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00707 K25861 - pcin:129320183 1939.08