Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00706 ATGGTACTCACGGAAGAACAAAGAAAACAAGCCGAAGCGAACCGATTAGCGGCCATTGAAAGACGAAAGGCAGTGTTAGAAGCTCGTGGAGAGAAAGGCCCTTGGCAGCTCTTCAAGTGCCGTAAGATCTCTTCCGAGTCTATTCCAAAGCCCACACCCACCGTTCACCAATCCCAGTCAGTCTCCGTTGATCCTGTTTCTGCAGCACCTCTGCCCCATAAATTTTTGGTTAGGCTAGAAATATGCTCTCCCGATTCCTTCTCTGCAACTCCTCTTCCCCTTCGAGGTTCCCCCTATCCCGGAGAAGAATGGTGCTTGCAGAGACTAAGTGATCATCTGTCCAATGTCATGCCTTCACACTACACCCAGAATCATGATGGAAGAAACGCCTGTGTGTATTACTTGAGGGATTACCATGCTGTCCTTAAATTTTTGAAAATTGTTACGGACATAGAAGTTGAAGATATTCCGCGGGCAACTTTGAAAGCCGTTGAAGCATTTTCACATTTCTCTGGTTCGGAGCGCTGGATACCCTGCAGGCCCGAGCATTTGTCTGATGACAAGGTTGATGAGTTAATTGGGAAGCTACCAAGGGCTCTGTTGGATGCGCTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTGGCCGGTGTCTTATTGCTGATGAAATGGGTCTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAATTAGAGCGGTGGCTTCCCTTTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTAACAAGATGCCCTAGAATTGTAGTTATTTCTTATACCATGCTTCATCGCTTGAGGAAGAGCATGTTTGAGCGAGAATGGGCTCTCTTGATTGTTGATGAATCTCATCATGTGCGATGTACGAGGAAAAGCTCAGAACCAGGGGAGATAAAGGCTGTTCTTGATGTAGCTTCAAAAGTCAAGCGCATAATACTGCTATCTGGGACGCCTTCTTTGTCAAGGCCATATGACATATTTCATCAGATAAACATGTTATGGCCTGGACTGCTGGGCGAGAATAAATATGCGTTTGCTAAAACTTACTGTGACAGTAAATATATCAAGGGAAGCCATGGCAAAATCTTTGCGGATTTTTCAAAGGGCATTCGCTTGGAAGAGTTGAATGTGTTACTCAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGCTGCTACAATTACCCCCAAAACGGAGGCAAATTATAAGGTTGTTGTTGAAGAGATCAGATGTAGTTGCTGCAAAGATGGCAGTTGGAAAGTTGAATAGCAGTACTTCCAAAAGTGACACTAAAGACATGACTTTGGACAGTTCTGATGAACCTGATGGTATGTTGAAAAGGTCAGACGTAGCTGCTGCAGATGTTGCAGTTGGGTTGTCAAATATTGACACTTCGGAAAGTGTTGATGAAGAGATAACTTTGGAAACCTTGGATGAATCTGAAGGGAAGCTTTCCTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTCGTGAATGGCTTTCCCTCCATCCAGTCATTGCCGGGTCAGAAAATGCTTCGAAAATGATCATTTTTGCTCATCACCACAAAGTTCTTGACAGGGTGCAGGAGTTTGTATGTGAGAAAGGGATTAGTTTTATCCGAATTGATGGAAACACACTTGCTAGGGATAGGCAGTCAGCGGTTGTGTCATTTCGTTCAAGACCAGAGGTTAAAATTGCAATAATTGGTATTTTAGCAGCAGGATTTGGAGTTGATTTCTCAACAGCCCAAGATGTCGTGTTCTTGGAGCTTCCTCAGTGCCCAACCCTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGAGGGCAAACAAATGCAGTCAATGTATATATCTTTTGTGCAAAGGATACTTTGGACGAGTCACATTGGAAAAATCTGAACAAAAGTTTGCACCGTGTTTCATCTACAACAGATGGAAAATATGATGCAATGAAAGAGATACAGGTTGAAGGTGTTTCTTACTTGGACACATTCTTCAAGACCAAGAGAAACTATGAAGGGCAATCTGCATCTGATGAAACTTCAGAACAGGCGACCACATTGCCGGATTCTGCCTCAGTTTCAAATCTGCAACCTTCCCAAGCAAATTCCGAGGAATCAGAAGCAAAAATGGGTGATCAAGCTGATCAGCAGTCTTGCTTTGCTGACAAGGTTTCCTGCCCAGAATCAAGCGAGCCATCTATTTTGGATGTAGATTTAGATGTAGATGTTTTTGACACCAAGGAAAAATCCTCTGGTTTTGACATGAGTAAGCTGGACAAGAGTTATGGAAGCAATGATCAGATGATCAGTGATGAAGATGAAGATGATAATCAAGGAGAAGAGAATAAAAAATCATTAACAATGAAAACAGATGACTACCAACCTGTTCATCCAGTTGAAGCCGAAAAAAGTTCCTCTCCTCACATTGAATATCTACGATTTGAGGTGAGCCCATACACTGGAAGGGTCCACTTGTATACTTGCATTTTGGGTGCAGATACAAGACCAAGACCACTTTGTAAGAATTTTCGACCAGAGGAACTTGAGTTGCTCAGTTCCATTTCTGATGATGATAAGAAAAAGGAGACTATTGGGGACAATCCTGCTTTTGCAAATGCTCTTTTGGGATTTTTAAATGAATGGAAGAAGTTAAGGCCAATTGAGCGAAGGAAGTTACTAGGAAAGCCATTACAACTTCCCTTGGCCGTTGAATTGTGCTACTTGAGCGAAAGTAGTAGCCACGACAAGGGGGGATTATTAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAATGGAGATAAGCCATCCTTTACCATCAGGTGCTGTTTGGAGAAAGGTCTGTCTGCGAAGTGGCAATGGCAAGAAAGAGAGAGAATACACTCAAGGTTGGACTCTAACAAATGAGCCACTCTGTAAGCTTTGTCAAAAGACATGCATGAGTAACAATGCCAAGACACCTGAATACTTTGAAGATCTTTTCTGTAACCTAGTCTGCTATGAAGAATATCGCATGAGAACGAGCAACAAGTTCCTTCGTCAGGAACTTTTCGAAGTTGAACATGGGGTGTGCTCGAATTGTCATTTAGACTGTCATAAACTAGTTGCACATATAAAACCTTTGCCACTAGCTAGGCGACGAGAGTACATTGAGAAAGTGGCACCAAATGTGGCTAAGCGAAAAAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCGTGGCACGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGTCGACTCGAGAATATGAGGACTCTTTGCGTGGCCTGCCATTACGGTGTTACAACAACGCAGTGTGCTGAACGACGCAAAGAGAGGGCCAGGGCCAGGAAACAACTAAAATTAGTAATGAGTCAGTTAAAGGCAGGTCAAACAAAGGTCGGCACAGATTCTAACATTAAGGGGCAGGGTCTTGTTGAGGTACAAGAGGATGAAAATGAGGATGAGCTCATTGTAAAGGTGCCTGGAAGTGCTTATTCAGTAGCTAATGGCTAA 3672 0.433 MVLTEEQRKQAEANRLAAIERRKAVLEARGEKGPWQLFKCRKISSESIPKPTPTVHQSQSVSVDPVSAAPLPHKFLVRLEICSPDSFSATPLPLRGSPYPGEEWCLQRLSDHLSNVMPSHYTQNHDGRNACVYYLRDYHAVLKFLKIVTDIEVEDIPRATLKAVEAFSHFSGSERWIPCRPEHLSDDKVDELIGKLPRALLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCLPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMFEREWALLIVDESHHVRCTRKSSEPGEIKAVLDVASKVKRIILLSGTPSLSRPYDIFHQINMLWPGLLGENKYAFAKTYCDSKYIKGSHGKIFADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVVAAKMAVGKLNSSTSKSDTKDMTLDSSDEPDGMLKRSDVAAADVAVGLSNIDTSESVDEEITLETLDESEGKLSYQELGIAKLSGFREWLSLHPVIAGSENASKMIIFAHHHKVLDRVQEFVCEKGISFIRIDGNTLARDRQSAVVSFRSRPEVKIAIIGILAAGFGVDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSSTTDGKYDAMKEIQVEGVSYLDTFFKTKRNYEGQSASDETSEQATTLPDSASVSNLQPSQANSEESEAKMGDQADQQSCFADKVSCPESSEPSILDVDLDVDVFDTKEKSSGFDMSKLDKSYGSNDQMISDEDEDDNQGEENKKSLTMKTDDYQPVHPVEAEKSSSPHIEYLRFEVSPYTGRVHLYTCILGADTRPRPLCKNFRPEELELLSSISDDDKKKETIGDNPAFANALLGFLNEWKKLRPIERRKLLGKPLQLPLAVELCYLSESSSHDKGGLLNGGSKRRMTPLMEISHPLPSGAVWRKVCLRSGNGKKEREYTQGWTLTNEPLCKLCQKTCMSNNAKTPEYFEDLFCNLVCYEEYRMRTSNKFLRQELFEVEHGVCSNCHLDCHKLVAHIKPLPLARRREYIEKVAPNVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYGVTTTQCAERRKERARARKQLKLVMSQLKAGQTKVGTDSNIKGQGLVEVQEDENEDELIVKVPGSAYSVANG 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00706 1223 Gene3D - 182 424 IPR038718 -
Accr12g00706 1223 Pfam Helicase conserved C-terminal domain 553 653 IPR001650 -
Accr12g00706 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 428 IPR027417 -
Accr12g00706 1223 MobiDBLite consensus disorder prediction 799 836 - -
Accr12g00706 1223 Coils Coil 9 29 - -
Accr12g00706 1223 CDD HNHc 1114 1150 IPR003615 -
Accr12g00706 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 699 IPR001650 -
Accr12g00706 1223 CDD SF2_C_SNF 535 664 - -
Accr12g00706 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 377 IPR014001 -
Accr12g00706 1223 SMART helicmild6 570 653 IPR001650 -
Accr12g00706 1223 MobiDBLite consensus disorder prediction 717 752 - -
Accr12g00706 1223 Gene3D - 439 745 IPR027417 -
Accr12g00706 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 705 IPR027417 -
Accr12g00706 1223 Gene3D - 1045 1179 - -
Accr12g00706 1223 FunFam SNF2 DNA repair protein, putative 178 427 - -
Accr12g00706 1223 Pfam HNH endonuclease 1120 1150 IPR002711 GO:0003676|GO:0004519|GO:0008270
Accr12g00706 1223 CDD DEXHc_HARP_SMARCAL1 204 428 - -
Accr12g00706 1223 SMART ultradead3 200 397 IPR014001 -
Accr12g00706 1223 MobiDBLite consensus disorder prediction 717 761 - -
Accr12g00706 1223 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1171 - -
Accr12g00706 1223 Pfam SNF2-related domain 222 452 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00706 Accr-Chr12 6708582 6720825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00706 558 706 RAD5 or RAD16-like Gene Family AT1G11100 33.775 2.42e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr12g00706 SNF2_N 3.7e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00706 K25861 - pcin:129320183 2038.46