Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00705 ATGTCTAATATTGCAGAGCTCAGCTGGAAAAGCGGCCAGCCTGTCATGCACGGGCTTAGTGGGCTCCTACCTATGGCCCCCCAAAAGCCCACATGGATCAGGGGCCATGATACTCTGGAGTCCATTGTTCAACAGGCTACTACATCATGGCAACGTCGTCAAAATTCAAATTTCTTCATGATGCCACAGGATCATGATCATACTCCAACCAGTATTAGCTCCACCGTTGCCCCCTCCGCCGGCAGGACTGAGAGACCCGGCCAAGCACAATCGGAGCCGACTCCGGCAAGGAAGCGGGTCCAGTCGGATTCCGGCTATCTCTACCTTGGCAACGGTTTGGAAGAATGTGAACCCAGCAGTGGAGGTTGTGCTAGTGGCAGCGCCACATTCTGTAGAAGCTTCAAGAGAAGTAGAACACTTGAGGATGATTCCCCTTCTCTTTGTGAATCGGAAAACCAAGACCAAGAAGAAGATAGAGACACTAAGGAAGAAACAGGCCGTTCCAACTCAACAAGAAGAAATCGAGCTGCGGCTGTCCATAACCAGAGTGAGCGGAGACGAAGGGATAGAATTAATCAGAAAATGAAAGATTTGCAGAGGTTGGTGCCCAACGCCAGCAAGAATGACAAAGCTTCAATATTAGACGAAGTGATTGAATACTTAAAGCAGCTTCAAACACAGATACAGTTGATGATGAGTATGAGAAACATGCCACAGCAGATGATGATGATGATGATGCAACAACAGCTTCAGATGTCTATGCTGGCTAGAATGGGTCTTGGGCTGGGCTCAGGCACAAGCGAAGGCCCGTCAGGAATGGGCCTTGCCCGCCCACCAGTTCTTCCTTCTCTTCCACCACAACTCCCAGTTGCTGCTCCTGCTATTACTCCTTCCTTCATGATGTCTCCATTGGTTCAAGCCCATGCTCCGCTTCCAAGGCCTGAACCTGCAGTATCTGCAGCTACCTCTAATGCCTCAATGTCTTTGCCCGATCCTTTTACCACTTTTCTTTCACAATCAGTAAATATGGATATTCTCAGCAACATGGAAGCGCTTTACCGGCAACAAATGAGACAGAACATGAGGAGCCAACATCATGGACAAGGGAATTGA 1113 0.4897 MSNIAELSWKSGQPVMHGLSGLLPMAPQKPTWIRGHDTLESIVQQATTSWQRRQNSNFFMMPQDHDHTPTSISSTVAPSAGRTERPGQAQSEPTPARKRVQSDSGYLYLGNGLEECEPSSGGCASGSATFCRSFKRSRTLEDDSPSLCESENQDQEEDRDTKEETGRSNSTRRNRAAAVHNQSERRRRDRINQKMKDLQRLVPNASKNDKASILDEVIEYLKQLQTQIQLMMSMRNMPQQMMMMMMQQQLQMSMLARMGLGLGSGTSEGPSGMGLARPPVLPSLPPQLPVAAPAITPSFMMSPLVQAHAPLPRPEPAVSAATSNASMSLPDPFTTFLSQSVNMDILSNMEALYRQQMRQNMRSQHHGQGN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00705 370 Coils Coil 181 208 - -
Accr12g00705 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Accr12g00705 370 MobiDBLite consensus disorder prediction 61 98 - -
Accr12g00705 370 SMART finulus 181 230 IPR011598 GO:0046983
Accr12g00705 370 MobiDBLite consensus disorder prediction 178 193 - -
Accr12g00705 370 MobiDBLite consensus disorder prediction 61 102 - -
Accr12g00705 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 253 IPR036638 GO:0046983
Accr12g00705 370 CDD bHLH_AtPIF_like 175 236 IPR047265 -
Accr12g00705 370 Pfam Helix-loop-helix DNA-binding domain 179 225 IPR011598 GO:0046983
Accr12g00705 370 MobiDBLite consensus disorder prediction 141 193 - -
Accr12g00705 370 Gene3D - 170 235 IPR036638 GO:0046983
Accr12g00705 370 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 362 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00705 Accr-Chr12 6694463 6697689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00705 4 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 38.610 2.47e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g00705 HLH 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00705 - - dzi:111317577 278.485