Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00693 ATGGCGGGAGAGTGGCCTTCACTTGTGCTTTCCATGGGCGGTCTTGATGATGTTGAAAACTACGTTTGTGCACATGAACAAGAAGGTTTGGCTCGGGACACATACCATCACATTTTTGAACTTGTGCGTAATGGCAACATGTCATTTCGGGAGAATCGATTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCCGGTGATCCTGTCATCCTCAGCAACCGATGTGCAGCTTATCTTAGGATTAGCAGATTCTTAAAAGATAGATCTCCATCTGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATTCATGCTGAACTTGGTTTGAAGGATGCCGAGAAGCTTGTTAACCTGCGAAATAATTCAGTAAAATCATACCTCTTGAAGGCTAATGCGCTTGTTCTATTAGAGAAATATGAAAAAGCCCGAGATGCTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGCGATTCCTTGCAAGCTTCACTTAAAAGTTTGGAAGCAGCATCTGGTAGTTTGATGGGGATGAGTGGACACGGACAGCCAGGGACGAGTACTCATGGACAACCAGAGCGAACTGATGACTTTGATTGCACCGTTTGCCTGAAATTGTTATACGAACCTGTCACGACCCCTTGTGGACATTCTTTTTGCCATTCATGTCTATTTCAGTCAATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTTATCAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAGAGCATTTTACAAAAGAACTTTCCAGAAGAATATGCCAGAAGAAAGCAAGAGCATGACAGTTTGACCAACTTTGGCGTAGATTTGCTACCTCTTTTTGTCATGGATGTGGTCATGCCATGTCAAAAACTCCCACTCAATATTTTTGAACCTCGATATAGACTTATGGTGAGAAGAGTAATGGAAGGGAATCATAGGATGGGAATGGCTATAATTGATTCTGCAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCAGACGGACGTTTCTATATAGAGATTGAAAGTCACAGGAGATTTCGCATAGTCCGATCTCTAGATCAAGATGGCTATCGTGTAGCAGAAGTTGAATGGATACAGGACATCATACCTCCAGAAGGTAGTACAGAGAAACAGCATTTACTGGAATTGACGTATGATGCAGCTGAAACTGCCCGATCATGGATAAGAAGAGCTAAAGAAGCAGCAAGAGCGAAACAAGATCAAAGAAGACTTGAGAGAATCGAGTCTGTTGAATTGCTGATGCCGAGTCTAAAAGATCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTATCAAAGCTGAGGCCTCTTGAAAGATTAGATCTTATGGGCTTAATAAATACCGGAGAGAGGATAAGACGAGGACTGAATTATCTGCGAGCAGAGGAACAACGCTGCAGAATTCAATAA 1491 0.4259 MAGEWPSLVLSMGGLDDVENYVCAHEQEGLARDTYHHIFELVRNGNMSFRENRLEEAINFYSRANSIKPGDPVILSNRCAAYLRISRFLKDRSPSASEYKPLSGLDPTIHAELGLKDAEKLVNLRNNSVKSYLLKANALVLLEKYEKARDAILSGLQVDPFSDSLQASLKSLEAASGSLMGMSGHGQPGTSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCHSCLFQSMDHGNRCPLCRTVLFISPRTCSISVTLKSILQKNFPEEYARRKQEHDSLTNFGVDLLPLFVMDVVMPCQKLPLNIFEPRYRLMVRRVMEGNHRMGMAIIDSATGSLAEYACEVEITECEPLPDGRFYIEIESHRRFRIVRSLDQDGYRVAEVEWIQDIIPPEGSTEKQHLLELTYDAAETARSWIRRAKEAARAKQDQRRLERIESVELLMPSLKDPERFSFWLASLSKLRPLERLDLMGLINTGERIRRGLNYLRAEEQRCRIQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00693 496 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Accr12g00693 496 SUPERFAMILY PUA domain-like 288 486 IPR015947 -
Accr12g00693 496 Gene3D Tetratricopeptide repeat domain 37 175 IPR011990 GO:0005515
Accr12g00693 496 Pfam Zinc finger, C3HC4 type (RING finger) 204 241 - -
Accr12g00693 496 CDD RING-HC_LONFs_rpt2 201 245 - -
Accr12g00693 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 283 IPR013083 -
Accr12g00693 496 ProSiteProfiles TPR repeat profile. 38 71 IPR019734 GO:0005515
Accr12g00693 496 Pfam ATP-dependent protease La (LON) substrate-binding domain 288 486 IPR003111 -
Accr12g00693 496 SUPERFAMILY RING/U-box 198 264 - -
Accr12g00693 496 SUPERFAMILY TPR-like 38 169 IPR011990 GO:0005515
Accr12g00693 496 SMART ring_2 204 241 IPR001841 -
Accr12g00693 496 PANTHER RING FINGER PROTEIN 127 33 488 - -
Accr12g00693 496 ProSiteProfiles Lon N-terminal domain profile. 285 488 IPR003111 -
Accr12g00693 496 SMART lon_5 287 488 IPR003111 -
Accr12g00693 496 ProSiteProfiles Zinc finger RING-type profile. 204 242 IPR001841 -
Accr12g00693 496 Gene3D - 286 388 IPR046336 -
Accr12g00693 496 SMART tpr_5 38 71 IPR019734 GO:0005515
Accr12g00693 496 SMART tpr_5 129 162 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00693 192 248 C3H Transcription Factor Family AT4G27470 37.313 7.63e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00693 - - pcin:129321082 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00693 12 6531704 6537018 Accr12g00693 12 6531704 6537018 ECH