Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00683 ATGGAAAACCTTGTGGGACTCTGTAAGGAAGAAGAGAAAATGAATTTGCCTCCTGGATTTCGGTTTCATCCGACTGATGAAGAGCTTATAAGTCATTACTTGTACAAGAAGGCCACTGATTCCAACTTCTCAGCTAGGGCCATTGGGGAGGTAGATTTGAACAGGTCTGAACCATGGGATTTGCCATTAGGGAAAGCCAAAATGGGAGAAAAAGAGTGGTACTTCTTTTGCGTGAGAGACAGAAAATACCCAACTGGTTTGAGAACCAACAGGGCCACTGAAACAGGATACTGGAAAGCCACAGGGAAAGATAGAGAGATTTACAGAGGAAAATCTCTGGTTGGTATGAAGAAAACCCTGGTTTTCTACAAAGGAAGAGCACCCAAAGGAGAAAAAACCAACTGGGTCATGCACGAATACAGATTAGAGGGTAGATTCTCTGTCCACAACCTCCCCAAAACCGCAAAGAACGAATGGGTGATTTGCAGGGTTTTTCAGAAAGGTTCAAGTGGTAAGAAAACTCATATTTCTGGGATGATGAGGTTAGATTCTCTGGGAAATGAATTGGGTTCTTCTGGTTTACCGCCATTGACAGATTCGTCACCTTTCCCTGGCAATAAAACCAAACCTGTCACAGATCAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATCGATGCTCATCAGAGAAACAACCAAGGAGGGATCTTTGATTCCTACAGCAACAGCTTCCCTAATTATGGTGTTTCTTCTTCGAATCCCTCCTCAGACACTACACTTCCCAGAATCGCACTTTCTGGTTCCTTATATTCCTCTCAACAACAACAACCACACCATCATCAAGCTCCTTCAAGTTTAGCTTCGCCCAGTTCTATTTATGGCCTGCAAGACCAGACTTTGCTCAGAGCCTTGCTTGAAAACCAAGAATCAAACAGGAACAATTTCAAGCCCGAGAGGGACATGATCAGCGTGTCTCAAGAAACAGGTCTCACTACCGACATGAACCCGGAAATCTCCTCGGTCGTGTCGAATCTCCATCAGCAGCAGCAGCAGCAACCAACAGCTTCAGCTGCAGCAATGGACTATGAAGGTTTGTGGACTTACTGA 1107 0.4499 MENLVGLCKEEEKMNLPPGFRFHPTDEELISHYLYKKATDSNFSARAIGEVDLNRSEPWDLPLGKAKMGEKEWYFFCVRDRKYPTGLRTNRATETGYWKATGKDREIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGRFSVHNLPKTAKNEWVICRVFQKGSSGKKTHISGMMRLDSLGNELGSSGLPPLTDSSPFPGNKTKPVTDQSAYVPCFSNPIDAHQRNNQGGIFDSYSNSFPNYGVSSSNPSSDTTLPRIALSGSLYSSQQQQPHHHQAPSSLASPSSIYGLQDQTLLRALLENQESNRNNFKPERDMISVSQETGLTTDMNPEISSVVSNLHQQQQQQPTASAAAMDYEGLWTY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00683 368 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Accr12g00683 368 Gene3D NAC domain 25 171 IPR036093 GO:0003677|GO:0006355
Accr12g00683 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 307 - -
Accr12g00683 368 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Accr12g00683 368 FunFam NAC domain-containing protein 100-like 25 171 - -
Accr12g00683 368 MobiDBLite consensus disorder prediction 187 210 - -
Accr12g00683 368 MobiDBLite consensus disorder prediction 269 290 - -
Accr12g00683 368 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Accr12g00683 368 MobiDBLite consensus disorder prediction 191 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00683 Accr-Chr12 6455649 6456974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00683 14 368 NAC Transcription Factor Family AT5G07680 55.028 2.82e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr12g00683 NAM 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00683 - - qsa:O6P43_022865 502.286