Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00680 ATGGGAAGAGTTAAGCTAAAGATAAAGAAGTTAGAGAACATTAGCAATCGACAAGTGACTTTTTCAAAGCGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTATCAATATTGTGTGATATAGACATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTTCAAGGAGAGCGCAGCAACCTTGAGGAGGTCATTGAAAAATTTGCTCAACTAAGTGCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGTCAACAAGTCGAGGAATTGACTCATCACGTGAGAATGCTACAAGCTCACCTTGCTGACTCACACCAGAGACTGAGCTATTGGGATAACATAGAAAAGATCAATGATGTTGAACCTCTTAGGCAAATGGAAGAGTCACTAAAGGAGTCAATCAACCGAGTACGTCTACACAAGGAAAATTTGGGGAAACACCACATAATGTCACTTGAATGCGCTAACCAGTTACAGGAAGGGATGACTTTACCCATGATGATGGCTGGTTTGCAAGAAGCTCAACCTCTGTCTTGGCTGTTGAATAATGATAATAATCAATTGATAATGCCTAGTGAACCAAAATTTCTGCCATATACTGATAATCCCAATAGAGGTGCTGAATGCTCCATTAACGTTTCACTACCAGACTATTCTGGTTACATAAGCACTGGCAAACTTGAGGCCGGCAACTCAGCTCAAGTTGCTACTTTGGGCCAGGGTGGTGGTACCATGAATGAGTTTAGTGAAGGTTCTTGCTTAAACGCACAACATTGCGAGCAGTTTTCATACCCTCCACTGCCGGATACTGAGGGACAGAAGCATCATCAAGTTATGAACAGTAGACCGAGCCCTGTGGATTATCAAGTTAATGGCAACTTTGATATGCCTAGATCCATCTTTGAAAATGGAAATCAATTCTGGAATTCTACTTCTGCACCTTGTAGCATTGCCATGTACAATGAGAATGGCTACCATCAGTAA 1062 0.4096 MGRVKLKIKKLENISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLEEVIEKFAQLSAQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSQQVEELTHHVRMLQAHLADSHQRLSYWDNIEKINDVEPLRQMEESLKESINRVRLHKENLGKHHIMSLECANQLQEGMTLPMMMAGLQEAQPLSWLLNNDNNQLIMPSEPKFLPYTDNPNRGAECSINVSLPDYSGYISTGKLEAGNSAQVATLGQGGGTMNEFSEGSCLNAQHCEQFSYPPLPDTEGQKHHQVMNSRPSPVDYQVNGNFDMPRSIFENGNQFWNSTSAPCSIAMYNENGYHQ 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00680 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 212 - -
Accr12g00680 353 Coils Coil 57 97 - -
Accr12g00680 353 Coils Coil 149 169 - -
Accr12g00680 353 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Accr12g00680 353 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Accr12g00680 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Accr12g00680 353 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Accr12g00680 353 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Accr12g00680 353 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr12g00680 353 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr12g00680 353 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr12g00680 353 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00680 Accr-Chr12 6408384 6411860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00680 1 277 Type I MADS-box Gene Family AT2G03060 48.084 5.56e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr12g00680 SRF-TF 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00680 - - lang:109362237 530.406