Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00679 ATGGGAAGAGTTAAGCTAAAGATAAAGAAGTTAGAGAACATTAGCAATCGACAAGTGACTTTTTCAAAGCGAAAGAGTGGAATATTGAAGAAAGCCAAGGAATTATCAATATTGTGTGATATAGACATTGCCCTTCTCATGTTTTCTCCGACAGGGAAGCCTATATTACTTCAAGGAGAGCGCAGCAACCTTGAGGAGGTCATTGAAAAATTTGCTCAACTAAGTGCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAACAAGTCGAGGAATTGACTCATCACGTGAGAATGCTACAAGCTCACCTTGCTGACTCACACCAGAGACTGAGCTATTGGGATAACATAGAAAAGATCAATGATGTTGAACCTCTTAGGCAAATGGAAGAGTCACTAAAGGAGTCAATCAACCGAGTACGTCTACACAAGGAAAATTTGGGGAAACACCACATAATGTCACTTGAATGCGCTAACCAGTTACAGGAAGGGATGACTTTACCCATGATGATGGCTGGTTTGCAAGAAGCTCAACCTCTGTCTTGGCTGTTGAATAATGATAATAATCAATTGATAATGCCTAGTGAACCAAAATTTCTGCCATATACTGATAATCCCAATAGAGGTGCTGAATGCTCCATTAACGTTTCACTACCAGACTATTCTGGTTACATAAGCACTGGCAAACTTGAGGCCGGCAACTCAGCTCAAGTTGCTACTTTGGGCCAGGGTGGTGGTACCATGAATGAGTTTAGTGAAGGTTCTTGCTTAAACGCACAACATTGCGAGCAGTTTTCATACCCTCCACTGCCGGATACTGAGGGACAGAAGCATCATCAAGTTATGAACAGTAGACCGAGCCCTGTGGATTATCAAGTTAATGGCAACTTTGATATGCCTAGATCCATCTTTGAAAATGGAAATCAATTCTGGAATTCTACTTCTGCACCTTGTAGCATTGCCATGTACAATGAGAATGGCTACCATCAGTAA 1065 0.4103 MGRVKLKIKKLENISNRQVTFSKRKSGILKKAKELSILCDIDIALLMFSPTGKPILLQGERSNLEEVIEKFAQLSAQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHHVRMLQAHLADSHQRLSYWDNIEKINDVEPLRQMEESLKESINRVRLHKENLGKHHIMSLECANQLQEGMTLPMMMAGLQEAQPLSWLLNNDNNQLIMPSEPKFLPYTDNPNRGAECSINVSLPDYSGYISTGKLEAGNSAQVATLGQGGGTMNEFSEGSCLNAQHCEQFSYPPLPDTEGQKHHQVMNSRPSPVDYQVNGNFDMPRSIFENGNQFWNSTSAPCSIAMYNENGYHQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00679 354 Coils Coil 57 97 - -
Accr12g00679 354 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Accr12g00679 354 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Accr12g00679 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 213 - -
Accr12g00679 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Accr12g00679 354 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Accr12g00679 354 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr12g00679 354 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr12g00679 354 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr12g00679 354 Coils Coil 150 170 - -
Accr12g00679 354 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr12g00679 354 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00679 Accr-Chr12 6408384 6411860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00679 1 278 Type I MADS-box Gene Family AT2G03060 48.084 8.07e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr12g00679 SRF-TF 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00679 - - lang:109362237 535.028