Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00677 ATGCAGGAATCTAGAGACCCAGCAATTAAGCTTTTCGGCCAGAAGATTCCTGTGCCCGGTGAGGGCGAGCTTCATGCCGGAGCCGTCTCCGTCTCTGGTGATGCCGAAGACTATGAATCGCCGGACTCCATGGAGGTGGACAGACAAGAAGGAGGAGATTGTGATGATGGAGAACAACACAATTCAGAAGAGGAGAAGAACGATGAAGATGACAAGGATCATTCAGCTGGAAACACTACAGACAAAAAGAGAGAAGCTGATAATCCTCCAAACGCAGAAGAGGCCAAGAATCCAGACTCACAGGCTGAGGCTAGTGTGAACCCAAAAACACCTTCCGCAGATGAGGAGGAGATTGCAAAATCAAAAGGTGACAACAGCTCAGAGAAGGAGAAAAGTGATGCAGCCAACCCACAGGAAAAAACCCTGAAGAAGCCAGATAAAATACTTCCATGTCCTCGCTGCAACAGCATGGACACCAAATTCTGCTATTACAATAACTACAACATCAATCAGCCTCGTTATTTCTGCAAAGCCTGCCAAAGATACTGGACAGCAGGTGGTACCATGAGGAATGTACCAGTAGGGGCAGGTCGGCGAAAGAATAAGAACTCTTCTTCCCATTATCGCCACATCAGCATTTCAGAGGCTCTACAAGCGGCTAGAATTGATGCTCCAAATGGGACTCATCATCATCTTCCTGCGTTAAAGGGAAATGGCAGAGTCCTCAGTTTTGGATTAGATGCACCTCTTTGCGATTCTATGGCATCTGTCCTGAATCTTGCAGAGAAAAAGGTCCTAAATGGTGTGAGAAATGGCTATCACAGCAAAGCTGCTGAAACTGGTGGTGGTGGTGGTGATGACTGCTCAAGTGCATCTTCCATTACAGTTTCAAATTCTATGGAAGAAAGTGGCAAAAGTGTTTCCCAAGAATCTTTGCTCAGAACTAATGGTTTTTCTCCTCCAATCCCATGTCTTCCTGGTGTTCCCTGGCCTTATCCTTGGAATGCTCCAGTTCCTTCACCTCCTTTATGCCCTCCAGGATTTCCCTTACCATTCTATCCTGCAGCCTTTTGGAACTGTGGTATGCCAGGAAATTGGAATATGCCCTGGTTTCCCCCACACCCTGCTTCTCAAAACCCAATTTCTCCTACCACTACCAGTACTAGTCCTAATTCTCCAACATTAGGGAAGCATTCTAGGGATGGTGACTCACAGAAAGAAGAGCCATCATCAAAACCGAGAAATGGGTGTGTTTTGGTTCCTAAAACCTTGAGAATTGATGATCCAAGCGAAGCTGCAAAGAGTTCCATATGGGCAACTCTAGGAATCAAGAATGAATCAGCCAGTGGAGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGATGAGAAGGATCATGTTTTTGAAGCCTCGCTGGTGTTGCGGGCTAACCCTGCAGCCTTATCTAGATCCCTTAACTTCCATGAGAACTCCTGA 1476 0.4634 MQESRDPAIKLFGQKIPVPGEGELHAGAVSVSGDAEDYESPDSMEVDRQEGGDCDDGEQHNSEEEKNDEDDKDHSAGNTTDKKREADNPPNAEEAKNPDSQAEASVNPKTPSADEEEIAKSKGDNSSEKEKSDAANPQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHISISEALQAARIDAPNGTHHHLPALKGNGRVLSFGLDAPLCDSMASVLNLAEKKVLNGVRNGYHSKAAETGGGGGDDCSSASSITVSNSMEESGKSVSQESLLRTNGFSPPIPCLPGVPWPYPWNAPVPSPPLCPPGFPLPFYPAAFWNCGMPGNWNMPWFPPHPASQNPISPTTTSTSPNSPTLGKHSRDGDSQKEEPSSKPRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESASGGGMFKAFQSKKDEKDHVFEASLVLRANPAALSRSLNFHENS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00677 491 ProSiteProfiles Zinc finger Dof-type profile. 149 203 IPR003851 GO:0003677|GO:0006355
Accr12g00677 491 MobiDBLite consensus disorder prediction 1 149 - -
Accr12g00677 491 MobiDBLite consensus disorder prediction 42 92 - -
Accr12g00677 491 MobiDBLite consensus disorder prediction 277 311 - -
Accr12g00677 491 MobiDBLite consensus disorder prediction 113 147 - -
Accr12g00677 491 MobiDBLite consensus disorder prediction 286 311 - -
Accr12g00677 491 MobiDBLite consensus disorder prediction 380 398 - -
Accr12g00677 491 ProSitePatterns Zinc finger Dof-type signature. 151 187 IPR003851 GO:0003677|GO:0006355
Accr12g00677 491 Pfam Dof domain, zinc finger 146 203 IPR003851 GO:0003677|GO:0006355
Accr12g00677 491 MobiDBLite consensus disorder prediction 377 417 - -
Accr12g00677 491 PANTHER CYCLIC DOF FACTOR 2 1 491 IPR045174 GO:0003700|GO:0006355
Accr12g00677 491 MobiDBLite consensus disorder prediction 94 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00677 Accr-Chr12 6390818 6393474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00677 1 489 C2C2-Dof Transcription Factor Family AT3G47500 49.704 5.46e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr12g00677 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00677 - - qsa:O6P43_022858 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00677 12 6390818 6393474 Accr12g00677 12 6390818 6393474 ECH