Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00673 ATGAAGAAGAGACAGGTGGTTGTGAAGAGAGATGTGGTGGCCAAGACGTCGTCGTCGGTGATGAGGAACGTGAGATATTTGGAGTGTCAGAAGAATCACGCGGCCAACATTGGGGGCTACGCCGTGGACGGCTGCAGGGAGTTCATGGCCAGTGGCGATGACGTCACCGCCGGGGCTCTTACGTGTGCTGCTTGCGGCTGTCACAGGAATTTCCACCGAAGAGAAGTTCAGACCGAGGTTGTCTGTGAGTACTCTCCTCCTAATTCCGCTCGCTAA 276 0.5543 MKKRQVVVKRDVVAKTSSSVMRNVRYLECQKNHAANIGGYAVDGCREFMASGDDVTAGALTCAACGCHRNFHRREVQTEVVCEYSPPNSAR 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00673 91 Pfam ZF-HD protein dimerisation region 23 76 IPR006456 -
Accr12g00673 91 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 26 75 IPR006456 -
Accr12g00673 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 79 - -
Accr12g00673 91 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 25 76 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00673 Accr-Chr12 6345000 6345275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00673 1 89 Zinc finger-homeobox gene family AT1G18835 77.528 2.07e-44 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Accr12g00673 ZF-HD_dimer 8.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00673 - - rcu:8263435 158.688